...n of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
请问老师，出现这种情况应该怎么处理？
...t.char = "",check.names=F)
datExpr = datExpr[,-1]
# Take a quick look at what is in the data set
dim(datExpr)
##################check missing value and filter ###################
datExpr = t(datExpr[order(apply(datExpr,1,mad), decreasing = T)[1:5000],])
dim(datExpr)
根据上面的代码，...
...有脚本内存消耗较大，建议确保100G以上的内存空间：
#The gi_taxid_nucl.dmp is about 160 MB and contains two columns: the nucleotide's gi and taxid.
#The gi_taxid_prot.dmp is about 17 MB and contains two columns: the protein's gi and taxid.
#Divisions file (division.dmp):
# ...
...。
Next，:: about Mercator - PlabiPD在注释网站发现一个大坑，The Mapman desktop application requires a diagram that illustrates the pathway or process to be visualized. Each diagram consists of a pathway image file (.svg) and an extra protein/gene mapping file (.xml). Notice, the diagr...
...set()` and unset GITHUB_PAT in .Renviron (or elsewhere) if you want to use the more secure git credential store instead.
Error: Failed to install 'unknown package' from GitHub:
HTTP error 401.
Bad credentials
Rate limit remaining: 53/60
Rate limit reset at: 2024-11-18 08:36:57 UTC...
... was reached while trying to acquire a lock on file raw.vcf.tmp.idx. Since the GATK uses non-blocking lock acquisition calls that are not supposed to wait, this implies a problem with the file locking support in your operating system.
##### ERROR -----------------------------------------------------...
...
-g GENE_SYMBOL, --gene_symbol GENE_SYMBOL
Enter the file path that contains the gene
symbol[required]
-H HEIGHT, --height HEIGHT
the height of dumbbell plot[optional,default 6]
-W WIDTH, --width WIDTH
...
...iants loaded from .bim file.2045265 missing IDs set.684 people (0 males, 0 females, 684 ambiguous) loaded from .fam.Ambiguous sex IDs written to plink_pca.nosex .Using up to 23 threads (change this with --threads).Before main variant filters, 684 founders and 0 nonfounders present.Calculating allele...
... BED/GFF/VCF file of ranges to extract from -fi -name Use the name field for the FASTA header -split given BED12 fmt., extract and concatenate the sequencesfrom the BED "blocks" (e.g., exons) -tab Write output in TAB delimited format. ...
... sites t = -0.93574, df = 9, p-value = 0.3738alternative hypothesis: true mean is not equal to 4.595 percent confidence interval: 4.230016 4.611984sample estimates:mean of x 4.421 p=0.3738>0.05,认为所抽样水体的含氧量与多年平均值无显著差...
...
使用cBioPortal数据库可以先阅读关于该数据库的文章：
The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data.Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal.
大规模的癌症基因组计...