...set()` and unset GITHUB_PAT in .Renviron (or elsewhere) if you want to use the more secure git credential store instead.
Error: Failed to install 'unknown package' from GitHub:
HTTP error 401.
Bad credentials
Rate limit remaining: 53/60
Rate limit reset at: 2024-11-18 08:36:57 UTC...
... was reached while trying to acquire a lock on file raw.vcf.tmp.idx. Since the GATK uses non-blocking lock acquisition calls that are not supposed to wait, this implies a problem with the file locking support in your operating system.
##### ERROR -----------------------------------------------------...
...
-g GENE_SYMBOL, --gene_symbol GENE_SYMBOL
Enter the file path that contains the gene
symbol[required]
-H HEIGHT, --height HEIGHT
the height of dumbbell plot[optional,default 6]
-W WIDTH, --width WIDTH
...
... BED/GFF/VCF file of ranges to extract from -fi -name Use the name field for the FASTA header -split given BED12 fmt., extract and concatenate the sequencesfrom the BED "blocks" (e.g., exons) -tab Write output in TAB delimited format. ...
...iants loaded from .bim file.2045265 missing IDs set.684 people (0 males, 0 females, 684 ambiguous) loaded from .fam.Ambiguous sex IDs written to plink_pca.nosex .Using up to 23 threads (change this with --threads).Before main variant filters, 684 founders and 0 nonfounders present.Calculating allele...
... sites t = -0.93574, df = 9, p-value = 0.3738alternative hypothesis: true mean is not equal to 4.595 percent confidence interval: 4.230016 4.611984sample estimates:mean of x 4.421 p=0.3738>0.05,认为所抽样水体的含氧量与多年平均值无显著差...
...
使用cBioPortal数据库可以先阅读关于该数据库的文章：
The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data.Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal.
大规模的癌症基因组计...
...文件有3种类型，分别对应着不同的定量方法。
FPKM
The Fragments per Kilobase of transcript per Million mapped reads (FPKM) calculation normalizes read count by dividing it by the gene length andthe total number of reads mapped to protein-coding genes.
Upper Quartile FPKM
Th...
...息CLNALLELEID， CLNDN， CLNDISDB， CLNREVSTAT， CLNSIG：
ALLELEID ="the ClinVar Allele ID"
CLNDN ="ClinVar's preferred disease name for the concept specified by disease identifiers in CLNDISDB"CLNDNINCL ="For included Variant : ClinVar's preferred disease name for the concept specified by dis...
... your command are incorrect.
##### ERROR The error message below tells you what is the problem.
##### ERROR
##### ERROR If the problem is an invalid argument, please check the online documentation guide
##### ERROR (or rerun your command with --help) to view allowable command-line arguments for this...
...tors with values in [0, M] where M is maxColorValue. When this is255, the red, blue, green, and alpha values are coerced to integers in0:255 andthe result is computed most efficiently.namescharacter vector. The names for the resulting vector.maxColorValuenumber giving the maximum ofthe ...