traitColors = numbers2colors(datTraits, signed = FALSE)
Warning message:
In numbers2colors(datTraits, signed = FALSE) :
(some columns in) 'x' are constant. Their color will be the color of NA.
> # Plot the sample dendrogram and the colors underneath.
...per-read quality flag (Read_Filter), and removing base quality scores from the file. In the resulting files, all reads have a Read_Filter flag with value pass or reject. Importantly, it is still possible to produce fastq formatted files from SRA Lite format using the SRA toolkit. In this case, each ...
...能出现链偏好性。MLEAC：Maximum likelihood expectation (MLE) for the allele counts (not necessarily the same as the AC), for each ALT allele, in the same order as listedMLEAF：Maximum likelihood expectation (MLE) for the allele frequency (not necessarily the same as the AF), for each ALT al...
...例文件，放了所有样品的集合，但是跑出来是如下这样
the Number of subPop samples[found in VCF] is 0
sub Group Population szie is too small, SubGroup sample size: 0
##begin pair-wise R^2 cal. after filter Remain SNP Number : 0
#% number bin is 11%......--&...
...脚本中提到了，所生成的三种文件，其中 clip graph: This is the default graph. Stretches of sequence >10kb that were not aligned to the underlying SV/minigraph are removed. "Dangling" nodes (ie that don't have an edge on each side) that aren't on the reference path are also removed...
...NG SOMETHING NASTY!Someone could be eavesdropping on you right now (man-in-the-middle attack)!It is also possible that a host key has just been changed.The fingerprint for the ECDSA key sent by the remote host isSHA256:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.Please contact your system administrat...
...ms checked** using staged installationPackage librsvg-2.0 was not found in the pkg-config search path.Perhaps you should add the directory containing `librsvg-2.0.pc'to the PKG_CONFIG_PATH environment variableNo package 'librsvg-2.0' foundUsing PKG_CFLAGS=Using PKG_LIBS=-lrsvg-----------------------...
具体问题提示为：java.lang.IllegalArgumentException: Sample Line68 has an inconsistent number of alleles. The first genotype is diploid, but the genotype at position Chr2:35902177 is haploid