找到约 15 条结果

文章 iTOL进化树外层添加圆环

...式如下: DATASET_COLORSTRIP#lines starting with a hash are comments and ignored during parsing#select the separator which is used to delimit the data below (TAB,SPACE or COMMA).This separator must be used throught this file (except in the SEPARATOR line, which uses space).#SEPARATOR TABSEPARATO...

文章 利用WGCNA分析提升转录组测序文章档次

...章档次。 文章1: 题目:Identification of regulatory networks and hub genes controlling soybean seed set and size using RNA sequencing analysis期刊:Journal of Experimental BotanyIF:5.3性状:大豆籽粒大小 实验材料 大豆籽粒的大小是一个非常重要的农艺性...

问题 双通道平台数据标准化,scan protocol。

...SE8205的 Scan protocol 为 Axon 4000B scanner. Both the 635nm (red, Cy5) and 532nm (green, Cy3) channels are scanned simultaneously at 100% laser power, the PMT set between 600 and 950. Slides are scanned at a resolution of 10micron 我将课程代码中的 genepix 改成 axon,则显示如下...

文章 高分文章1

...群前列腺癌的基因组和表观基因组图谱 文献:A genomic and epigenomic atlas of prostate cancer in Asian populations 发表时间:2020.03 简介:通过对2,554例前列腺肿瘤的系统比较,绘制了亚洲人群前列腺癌基因图谱,揭示了东西方人前列腺癌...

文章 rgb函数选择颜色(并控制深浅)

...M] where M is maxColorValue. When this is255, the red, blue, green, and alpha values are coerced to integers in0:255 and the result is computed most efficiently.namescharacter vector. The names for the resulting vector.maxColorValuenumber giving the maximum of the color values range, see a...

问题 请教:基因结构分析时,输出的gene_exon_info.gff文件为空。该如何解决?

... ../script/get_gene_exon_from_gff.pl -in1 Carb_anhydrase_removed_redundant_and_confirmed_IDlist.txt -in2 ../Phaeodactylum_tricornutum.ASM15095v2.47.gff3 -out gene_exon_info.gff 图1 图2

文章 人类癌症数据库突变注释

cosmic70: the latest COSMIC database with somatic mutations from cancer and the frequency of occurence in each subtype of cancer. For more updated cosmic, see instructions below on how to make them.icgc21: International Cancer Genome Consortium version 21 mutations.nci60: NCI-60 human tumor cell lin...

文章 如何处理矫正GEO数据批次效应(batch effect)

...上面的数据利用李 dat = edata, batch = pheno$batchlibrary("limma")design <- model.matrix(~pheno$batch+pheno$hasCancer)limma.edata <- removeBatchEffect(edata,                                batch = pheno$batch,                                design = desi...

问题 GSVA Error: useNames = NA is defunct. Instead, specify either useNames = TRUE or useNames = FALSE.

...rixStats 1.2 that released a couple of days ago. Can you downgrade to 1.1 and try?remotes::install_version("matrixStats", version="1.1.0") # restart your session and run previous scripts

问题 单细胞测序数据FindAllMaker查找不同Cluster的Marker基因

...st one zero, cannot compute log geometric means data frame with 0 columns and 0 rows Error in `group_by_prepare()`: ! Must group by variables found in `.data`. • Column `cluster` is not found. Backtrace:     ▆  1. ├─obj.markers %>% group_by(cluster) %>% ...  2. ├─dplyr:...

文章 运行python STAMP程序报错

...don't work.You need to also specify an X-11 server on the host machine to handle the launch of GUId programs. If the client is a Windows machine install Xming. If the client is a Linux machine install XQuartz.Now suppose this is Windows connecting to Linux. In order to be able to launch X11 programs...

文章 pennCNV软件linux系统安装

... -c -o khmm_wrap.o khmm_wrap.c khmm_wrap.c: In function ‘SWIG_AsCharPtrAndSize’: khmm_wrap.c:1576: error: ‘bool’ undeclared (first use in this function) khmm_wrap.c:1576: error: (Each undeclared identifier is reported only once khmm_wrap.c:1576: error: for each function it appears in.) khm...

问题 使用vcftools过滤vcf文件缺失位点时报错

#代码 vcftools --gzvcf xxx.vcf.gz --max-missing 1.0 --recode --stdout | gzip -c > xxx.recode.vcf.gz #报错 Error: Require Genotypes in variant file to filter by frequency and/or call rate

文章 借助perl脚本进行文件整理 | 将按第一列信息整理的文件改成按照第二列信息整理

...有perl脚本如下:print "perl $0  <id_list> <out_file>\n" and die unless(@ARGV==2);open IN,"$ARGV[0]" or die "$!; can't open file $ARGV[0]\n";open OUT,">$ARGV[1]" or die "$!; can't open file $ARGV[1]\n";my%id;my%hash;while(<IN>){        chomp;        my@a=split(/\s/...

文章 Root microbiota assembly and adaptive differentiation among European Arabidopsis populations

...动欧洲各地的细菌菌群组成趋同。3. Root endosphere bacteria and A. thaliana exhibit stable associations(根内细菌和拟南芥种群存在稳定联系)首先作者将在80%以上地方都存在的微生物OTUs定义为地理广泛存在的OTUs,20%~80%定义为普遍存在的OTUs...