找到约 15 条结果

问题 vcftools过滤除了等位基因选项外,其他参数通通没用

...  13 Warning: Expected at least 2 parts in FORMAT entry: ID=PGT,Number=1,Type      14 Warning: Expected at least 2 parts in FORMAT entry: ID=PID,Number=1,Type      15 Warning: Expected at least 2 parts in FORMAT entry: ID=PL,Number=G,Type=      16 Warning: Expected at least 2 parts in F...

文章 R语言包安装方法,设置国内镜像加快安装速度

...R终端:>install.packages("/path/to/mypackage.tar.gz", repos = NULL, type = "source")更多R语言可学习课程:R语言画图、R语言快速入门与提高

文章 R语言-Cox比例风险模型

...相对于group one而言的,那么按照测试数据集来说:male=1,female=1,即女性的死亡风险相比男性要低 exp(coef)等于0.59,即风险比例等于0.59,说明女性(male=2)减少了0.59倍风险,女性与良好预后相关 lower .95 upper .95则是exp(coef)的95%...

文章 看懂变异记录结果文件(VCF)

... 更多参考:https://gatkforums.broadinstitute.org/gatk/discussion/1268/what-is-a-vcf-and-how-should-i-interpret-it 基因组重测序数据分析视频课程: https://bdtcd.xetslk.com/s/1VQOjQ 更多生物信息课程: 1. 文章越来越难发?是你没发现新思路,基因家...

问题 GWAS筛选阈值设置

For SNPs, we set the thresholds as −log10(P value) = 6, 6, and 4 for litter size, numbers of horns and nipples, respectively. 请问,这种自选的阈值,怎么选择呢?为什么有的是6有的是4呢?

文章 TCGA挖掘高分文章

...文章标题:Clinical significance and immunogenomic landscape analyses of the immune cell signature based prognostic model for patients with breast cancer 文章标题:   Immune cell infiltration-based signature for prognosis and immunogenomic analysis in breast cancer 文章标题:  m 6 ...

问题 用linux系统做gwas时运行脚本报错[Thread-9] ERROR net.maizegenetics.plugindef.AbstractPlugin - 0

...tics.plugindef.AbstractPlugin -  FileLoadPlugin Parameters format: Phenotype sortPositions: false keepDepth: true [pool-1-thread-2] INFO net.maizegenetics.plugindef.AbstractPlugin -  FileLoadPlugin Parameters format: Phenotype sortPositions: false keepDepth: true [pool-1-thread-1] IN...

文章 运行python STAMP程序报错

...g-6-9-0-31-setup.exe/download  然后按照以下方法设置:putty Other answers are outdated, or incomplete, or simply don't work.You need to also specify an X-11 server on the host machine to handle the launch of GUId programs. If the client is a Windows machine install Xming. If the client...

文章 简单的数据处理代码

...:        self.args = args    def norm_expr(self, probe_expr_df, norm_type):        if norm_type == "raw":            return probe_expr_df        elif norm_type == "cpm":            norm_factor = probe_expr_df.sum()            return probe_expr_df * 1000000 / norm_fact...

问题 老师好,我在使用SNP2CAPS软件时输入文件后显示Loaded data of 0 marker(s) and sequence(s). 显示没有加载到标记和序列,求解是什么问题呢

问题 MENA网站上传数据提示错误

..., please send mail to this site's webmaster, giving this error message and the time and date of the error. 我用网站提供的示例数据也试了,也换了360浏览器,结果还是一直提示这个错误。请问老师这是为什么呀

问题 reseqv2.0镜像annovar报错

...   -remove -protocol refGene -operation g -nastring . -vcfinput NOTICE: the --polish argument is set ON automatically (use --nopolish to change this behavior) NOTICE: Running with system command <convert2annovar.pl  -includeinfo -allsample -withfreq -format vcf4 /work/my_reseq/4.snp_indel/v...

问题 16S Picrust2

type分为了三个,代码对比了两个,出现了下面的问题 问题: --> Q&A for bioinformatics, please visit the website: https://www.omicsclass.com/ --> R beginners ? I suggest your  learning  R language: https://study.omicsclass.com/index Failed to create bus connect...

文章 WGCNA 中Relationship between module eigengenes图片绘制--plotMEpairs函数

...lated-06-RelatingToExt.pdf ######################################### The plots is shown in Fig. 2. The module eigengenes (rst PC) of different modules may be highly correlated.WGCNA can be interpreted as a biologically motivated data reduction scheme that allows for dependency betweenthe resul...

文章 NCBI的SRA Lite和SRA Normalized数据有什么区别

...per-read quality flag (Read_Filter), and removing base quality scores from the file. In the resulting files, all reads have a Read_Filter flag with value pass or reject. Importantly, it is still possible to produce fastq formatted files from SRA Lite format using the SRA toolkit. In this case, each ...