找到约 15 条结果

文章 TCGA挖掘高分文章

...文章标题:Clinical significance and immunogenomic landscape analyses of the immune cell signature based prognostic model for patients with breast cancer 文章标题:   Immune cell infiltration-based signature for prognosis and immunogenomic analysis in breast cancer 文章标题:  m 6 ...

文章 R语言-Cox比例风险模型

...相对于group one而言的,那么按照测试数据集来说:male=1,female=1,即女性的死亡风险相比男性要低 exp(coef)等于0.59,即风险比例等于0.59,说明女性(male=2)减少了0.59倍风险,女性与良好预后相关 lower .95 upper .95则是exp(coef)的95%...

文章 运行python STAMP程序报错

...g-6-9-0-31-setup.exe/download  然后按照以下方法设置:putty Other answers are outdated, or incomplete, or simply don't work.You need to also specify an X-11 server on the host machine to handle the launch of GUId programs. If the client is a Windows machine install Xming. If the client...

问题 用linux系统做gwas时运行脚本报错[Thread-9] ERROR net.maizegenetics.plugindef.AbstractPlugin - 0

...tics.plugindef.AbstractPlugin -  FileLoadPlugin Parameters format: Phenotype sortPositions: false keepDepth: true [pool-1-thread-2] INFO net.maizegenetics.plugindef.AbstractPlugin -  FileLoadPlugin Parameters format: Phenotype sortPositions: false keepDepth: true [pool-1-thread-1] IN...

文章 简单的数据处理代码

...:        self.args = args    def norm_expr(self, probe_expr_df, norm_type):        if norm_type == "raw":            return probe_expr_df        elif norm_type == "cpm":            norm_factor = probe_expr_df.sum()            return probe_expr_df * 1000000 / norm_fact...

问题 老师好,我在使用SNP2CAPS软件时输入文件后显示Loaded data of 0 marker(s) and sequence(s). 显示没有加载到标记和序列,求解是什么问题呢

问题 MENA网站上传数据提示错误

..., please send mail to this site's webmaster, giving this error message and the time and date of the error. 我用网站提供的示例数据也试了,也换了360浏览器,结果还是一直提示这个错误。请问老师这是为什么呀

问题 reseqv2.0镜像annovar报错

...   -remove -protocol refGene -operation g -nastring . -vcfinput NOTICE: the --polish argument is set ON automatically (use --nopolish to change this behavior) NOTICE: Running with system command <convert2annovar.pl  -includeinfo -allsample -withfreq -format vcf4 /work/my_reseq/4.snp_indel/v...

问题 16S Picrust2

type分为了三个,代码对比了两个,出现了下面的问题 问题: --> Q&A for bioinformatics, please visit the website: https://www.omicsclass.com/ --> R beginners ? I suggest your  learning  R language: https://study.omicsclass.com/index Failed to create bus connect...

文章 WGCNA 中Relationship between module eigengenes图片绘制--plotMEpairs函数

...lated-06-RelatingToExt.pdf ######################################### The plots is shown in Fig. 2. The module eigengenes (rst PC) of different modules may be highly correlated.WGCNA can be interpreted as a biologically motivated data reduction scheme that allows for dependency betweenthe resul...

文章 NCBI的SRA Lite和SRA Normalized数据有什么区别

...per-read quality flag (Read_Filter), and removing base quality scores from the file. In the resulting files, all reads have a Read_Filter flag with value pass or reject. Importantly, it is still possible to produce fastq formatted files from SRA Lite format using the SRA toolkit. In this case, each ...

文章 perl自动获取网页上的信息

...ion sub main {     # get params    # @_      # Within a subroutine the array @_ contains the parameters passed to that subroutine.     # Inside a subroutine, @_ is the default array for the array operators push, pop, shift, and unshift.     my $url = 'http://www.taobao.com';    die "n...

问题 关于mapman使用过程的问题

...列英文: 2496 out of 2456 data points have been sucessfully mapped to the bins of the choosen maping. However the pathway you choose does not show any of this bins.Either add those bins manually to this pathway or choose a different Pathway! 数据ID和mapping文件里边的BIN已经是对应...

文章 CentOS 7 yum安装报错

...6 - "Could not resolve host: mirrorlist.centos.org; Unknown error" One of the configured repositories failed (Unknown), and yum doesn't have enough cached data to continue. At this point the only safe thing yum can do is fail. There are a few ways to work "fix" this:     1. Contact the upstrea...

问题 基因家族鉴定

老师您好,请问: The predicted genes were then manually checked using NCBI and UniPort online BLASTP, with threshold of E-value < 10-25. Identified genes were validated by aligning to a nonredundant gene dataset. Identified genes were also validated by BLAST searching against an EST dat...