找到约 15 条结果

文章 R 安装github包报错:

Using github PAT from envvar GITHUB_PAT. Use `gitcreds::gitcreds_set()` and unset GITHUB_PAT in .Renviron (or elsewhere) if you want to use the more secure git credential store instead. Error: Failed to install 'unknown package' from GitHub:   HTTP error 401.   Bad credentials   Rate limit ...

文章 LENS:人的基因相互作用分析在线工具

... interactome analysis of human genes. LENS takes one or two lists of genes and determines the network of protein-protein interactions that connects them. LENS computes several statistics including associations of the genes in the interactome to diseases, drugs, pathways, and GWASs, as well as, stati...

文章 生信分析-小提琴图绘制-脚本使用

...show this help message and exit -m meta, --meta meta Input the clinical information file path that contains the grouping[required] -n name, --name name The column name of the value[optional,default:IRPS] -g group_name, --group_name group_name S...

问题 我用conda 根本安装不了软件,非常慢,比如UMI-tools

...es.DistributionNotFound: The 'umi-tools==0.2.3' distribution was not found and is required by the application

文章 基因组版本 Primary 和 Alternate的区别

...mpanies a primary assembly. It is not useful by itself as it is fragmented and incomplete.https://lh3.github.io/2021/04/17/concepts-in-phased-assemblies

文章 blast序列比对中E值是什么意思?

...匹配了 E-value - this tells you the probability of getting this score and homology by chance (from random sequence), that is, the lower (the higher the number behind e-), the more reliable the result is. As I have mentioned above, it's not only about homology, but also about the length, because ...

问题 运行GDCprepare(query, save=FALSE)时错误

..._col_location()`: ! Can't subset columns past the end. i Locations 2, 3, and 4 don't exist. i There is only 1 column. Run `rlang::last_error()` to see where the error occurred. There were 50 or more warnings (use warnings() to see the first 50) > rlang::last_error() <error/vctrs_error_s...

文章 MCscan报错——kpsewhich命令缺失

...on2.7/site-packages/jcvi/graphics/dotplot.py", line 79, in plot_breaks_and_labels    th = TextHandler(fig)  File "/biosoft/python/Python-v2.7.11/lib/python2.7/site-packages/jcvi/graphics/base.py", line 51, in __init__    self.build_height_array(fig)  File "/biosoft/python/Pyt...

文章 windows10中基于WSL2的docker镜像存储位置更改

...y transition was lack of a setting screen to actually define the location (and other params), where the containers and downloaded images should be stored. As the space they occupy grows really fast and default is not always the best place for it! I don’t understand why, but because of such practi...

文章 再挖TCGA,发篇SCI

...金思路。接下来以一篇2018年7月30日发表在Cellular Physiology and Biochemistry(IF=5.5)上题为Genome-Wide Analysis of Prognostic lncRNAs, miRNAs, and mRNAs Forming a Competing Endogenous RNA Network in Hepatocellular Carcinoma 的文章为例,详细介绍下该类文章的写作...

文章 blast XML结果解析,获得更多blast比对信息 perl

...denticalHSPfrac_conserved0.923076923076923fraction conserved (conservative and identical replacements aka “fraction similar”)HSPgaps2number of gapsHSPquery_stringDMGRCSSG ..query string from alignmentHSPhit_stringDIVQNSS …hit string from alignmentHSPthomology_stringD+ + SSGCN …string from al...

文章 TCGA和GEO套路文章解说

...章。 文章1: 文章今年(2018)发表在:Cancer Management and Research 上IF=3.851。该文章发表的杂志影响因子虽然不高,但是分析思路还是可以借鉴的:文章主要分析结论是:利用公共数据(GEO,TCGA数据),通过数据筛选分析后发现...

文章 外源插入流程报错运行不了

...ing Biopython from inside the source tree. This is bad practice and might lead to downstream issues. In particular, you might encounter ImportErrors due to missing compiled C extensions. We recommend that you try running your code from outside the source tree...

文章 mysql 查询select语句汇总

... -- 查询名字 不是黄蓉的信息。 4.2 逻辑运算符: and or not select * from students where id > 3 and gender = 0; -- 在students表中 查询id比3大的 并且 性别是第一个枚举对象的。 4.3 模糊查询: like、rlike % 表示任意...

文章 Orthology 定义

...descended side by side during the history of an organism (for example, α- and β- hemoglobin) the genes should be called paralogous (para = in parallel). Where the homology is the result of speciation so that the history of the gene reflects the history of the species (for example α hemoglobin in ...