...rimary assembly: a complete assembly with long stretches of phased blocks. The concept has been used by GRC. BAC-to-BAC assemblies can all be regarded as primary assemblies. Falcon-unzip is perhaps the first to produce such assemblies for whole-genome shotgun data.Alternate assembly: an incomplete ...
...rence/best_practices
The debugging facility is helpful to figure out what's happening under the
hood
http://www.circos.ca/documentation/tutorials/configuration/debugging
If you're still stumped, get support in the Circos Google Group.
http://groups.google.com/...
... 13 Warning: Expected at least 2 parts in FORMAT entry: ID=PGT,Number=1,Type
14 Warning: Expected at least 2 parts in FORMAT entry: ID=PID,Number=1,Type
15 Warning: Expected at least 2 parts in FORMAT entry: ID=PL,Number=G,Type=
16 Warning: Expected at least 2 parts in F...
... -format => 'fasta');while ( my $seqobj = $in->next_seq() ) {
# the human read-able id ofthe sequence
my $id=$seqobj->id(); # string of sequence
my $seq=$seqobj->seq();
# a description ofthe sequence
my $desc=$seqobj->desc();
# one of 'dna','rna','protein' https://www.bi...
...方法。
Annotated : number of genes in go.db which are annotated with the GO-term.Significant : number of genes belonging to your input which are annotated with the GO-term.Expected : show an estimate ofthe number of genes a node of size Annotated would have if the significant genes were to be r...
...上，形成一个序列相似、功能相近的基因簇。According to the descriptions of Holub [1], a chromosomal region within 200 kb containing two or more genes is defined as a tandem duplication event.
3.染色体片段复制(Segmental duplication)：导致复制的基因距离较远，...
...primer3.input" or die "$!";my%ssr_pos=(); #ssr相关信息my%SSR=(); # SSR type while(my$line=){chomp $line;my@tmp=split(/\t/,$line);next if ($tmp[0] eq "ID");my$ID="$tmp[0]_$tmp[5]_$tmp[6]_$tmp[4]";$ssr_pos{$ID}="$tmp[0]\t$tmp[5]\t$tmp[6]\t$tmp[4]\t$tmp[2]";my$seq=&get_target_fa($tmp[0],$tmp[5...
For SNPs, we set the thresholds as −log10(P value) = 6, 6, and 4 for litter size, numbers of horns and nipples, respectively.
请问，这种自选的阈值，怎么选择呢？为什么有的是6有的是4呢？
...文章标题:Clinical significance and immunogenomic landscape analyses ofthe immune cell signature based prognostic model for patients with breast cancer
文章标题: Immune cell infiltration-based signature for prognosis and immunogenomic analysis in breast cancer
文章标题: m 6 ...
...g-6-9-0-31-setup.exe/download 然后按照以下方法设置：putty
Other answers are outdated, or incomplete, or simply don't work.You need to also specify an X-11 server on the host machine to handle the launch of GUId programs. If the client is a Windows machine install Xming. If the client...