找到约 15 条结果

文章 重测序群体遗传进化分析之—进化树构建

...多不同的模型计算初始简约树的逻辑概率,并产生Akaike information criterion (AIC),* corrected Akaike information criterion* (AICc), and* the Bayesian information criterion* (BIC)三个结果标准值,通常ModelFinder选择BIC分数最低的模型(当然也可以指定AIC和AI...

问题 我的Conda 根本安装不成功软件,比如UMI tools ,怎么办

...es.DistributionNotFound: The 'umi-tools==0.2.3' distribution was not found and is required by the application

问题 ANNOVAR变异注释报错:Erro: invalid record found in exonic_variant_function file (exonic format error)

...use --nopolish to change this behavior) NOTICE: Running with system command <convert2annovar.pl  -includeinfo -allsample -withfreq -format vcf4 /work/bdorsalis/4.snp_indel/var_qc/all.clean.snp.vcf.gz > /work/bdorsalis/5.var_ann/test/snp.avinput> NOTICE: Finished reading 840 lines from ...

问题 请问一下做WGCNA时,出现这种问题如何解决呢?用的是课程的数据

traitColors = numbers2colors(datTraits, signed = FALSE) Warning message: In numbers2colors(datTraits, signed = FALSE) : (some columns in) 'x' are constant. Their color will be the color of NA. > # Plot the sample dendrogram and the colors underneath.

文章 VG 泛基因组call 变异

#this script report the commands used to call variants from the 16 Illumina WGS barn swallow individuals.#for steps 1-3, this github solution was followed: https://github.com/vgteam/vg/issues/3411#for steps 4-9, the section "Calling the graph by first splitting into components" of this tutorial was ...

文章 R 安装github包报错:

Using github PAT from envvar GITHUB_PAT. Use `gitcreds::gitcreds_set()` and unset GITHUB_PAT in .Renviron (or elsewhere) if you want to use the more secure git credential store instead. Error: Failed to install 'unknown package' from GitHub:   HTTP error 401.   Bad credentials   Rate limit ...

文章 LENS:人的基因相互作用分析在线工具

... interactome analysis of human genes. LENS takes one or two lists of genes and determines the network of protein-protein interactions that connects them. LENS computes several statistics including associations of the genes in the interactome to diseases, drugs, pathways, and GWASs, as well as, stati...

问题 我用conda 根本安装不了软件,非常慢,比如UMI-tools

...es.DistributionNotFound: The 'umi-tools==0.2.3' distribution was not found and is required by the application

文章 基因组版本 Primary 和 Alternate的区别

...mpanies a primary assembly. It is not useful by itself as it is fragmented and incomplete.https://lh3.github.io/2021/04/17/concepts-in-phased-assemblies

文章 blast序列比对中E值是什么意思?

...匹配了 E-value - this tells you the probability of getting this score and homology by chance (from random sequence), that is, the lower (the higher the number behind e-), the more reliable the result is. As I have mentioned above, it's not only about homology, but also about the length, because ...

文章 MCscan报错——kpsewhich命令缺失

...on2.7/site-packages/jcvi/graphics/dotplot.py", line 79, in plot_breaks_and_labels    th = TextHandler(fig)  File "/biosoft/python/Python-v2.7.11/lib/python2.7/site-packages/jcvi/graphics/base.py", line 51, in __init__    self.build_height_array(fig)  File "/biosoft/python/Pyt...

问题 运行GDCprepare(query, save=FALSE)时错误

..._col_location()`: ! Can't subset columns past the end. i Locations 2, 3, and 4 don't exist. i There is only 1 column. Run `rlang::last_error()` to see where the error occurred. There were 50 or more warnings (use warnings() to see the first 50) > rlang::last_error() <error/vctrs_error_s...

文章 windows10中基于WSL2的docker镜像存储位置更改

...y transition was lack of a setting screen to actually define the location (and other params), where the containers and downloaded images should be stored. As the space they occupy grows really fast and default is not always the best place for it! I don’t understand why, but because of such practi...

文章 生信分析-小提琴图绘制-脚本使用

...show this help message and exit -m meta, --meta meta Input the clinical information file path that contains the grouping[required] -n name, --name name The column name of the value[optional,default:IRPS] -g group_name, --group_name group_name S...

文章 再挖TCGA,发篇SCI

...金思路。接下来以一篇2018年7月30日发表在Cellular Physiology and Biochemistry(IF=5.5)上题为Genome-Wide Analysis of Prognostic lncRNAs, miRNAs, and mRNAs Forming a Competing Endogenous RNA Network in Hepatocellular Carcinoma 的文章为例,详细介绍下该类文章的写作...