找到约 15 条结果

文章 服务器docker防止退出之后容器杀死导致任务中断

...od 389b0c34313d9b23ecea3faa0e494e28413bd15566d66297efa9b5065e025262: error retrieving lock 0 for pod 389b0c34313d9b23ecea3faa0e494e28413bd15566d66297efa9b5065e025262: file exists 运行以下命令之后,再正常使用docker即可避免上面的错误 $ loginctl enable-linger $USER ...

文章 linux 硬盘分区 格式化 挂载

...es will remain in memory only, until you decide to write them.Be careful before using the write command.Device does not contain a recognized partition tableBuilding a new DOS disklabel with disk identifier 0xeb311dde.Command (m for help): m #打印帮助Command action   a   toggle a bootabl...

文章 docker启动报错:Error starting daemon: SELinux is not supported with the overlay2 graph driver on this ke

...kersystemctl status docker -l 报错:Error starting daemon: SELinux is not supported with the overlay2 graph driver on this kernel. Either boot into a newer kernel or disable selinux in docker (--selinux-enabled=false) 解决方案: 意思是说:此linux的内核中的SELinux不支...

问题 下载COAD数据提示列不一致保存不成功

...ames, fill, idcol) :    Item 2 has 62 columns, inconsistent with item 1 which has 63 columns. To fill missing columns use fill=TRUE.

文章 stacks RAD 分析方法

...th uncalled bases (-c) and rescuing barcodes and radtags (-r). SNP calling for each individual was done using the program denovo_map.pl of Stacks. The denovo_map.pl included six core components: building loci (ustacks), creating a catalog of loci (cstacks), and matching samples back against the ...

文章 BiocManager::install("seqinr")时报错

make: *** [surfaceArea.o] Error 1 ERROR: compilation failed for package ‘sp’ * removing ‘/share/work/biosoft/R/R-v4.2.2/lib64/R/library/sp’ * installing *source* package ‘Rcpp’ ... ** package ‘Rcpp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -...

文章 TCGA数据库中应该下载哪种表达量数据HTSeq-Counts,HTSeq-FPKM,HTSeq-FPKM-UQ

... FPKM The upper quartile FPKM (FPKM-UQ) is a modified FPKM calculation in which the total protein-coding read count is replaced by the 75th percentile read count value for the sample. Counts 就不用说了,来看看FPKM和FPKM-UQ有啥差别,这个可以查看GDC的官方说明文档中的...

文章 perl中判断数组中是否含有某个元素

...f values, but it only returns true or false. True, if the block gives true for any of the values. False if none of them match. It also short circuits so on large lists this can be a lot faster. any函数的语法和grep一样,传入一个代码快和一个列表,但是仅返回true或false。...

文章 利用单拷贝直系同源基因蛋白序列做分歧时间树mcmctree

...species.tre |sed -r 's/:[0-9\.]+//g' |sed -r 's/\)[0-9\.]+/)/g'>species_formated.tre #######手动编写进化树, #添加化石时间点:timetree http://timetree.org/ #设置进化树的root : https://itol.embl.de/ #添加化石校准点时间信息(格式是时间范围’>0.23&l...

问题 R包安装

 Warning message: package ‘edgeR’ is not available for this version of R A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages    请问老师,出现这种情况...

文章 基因组版本 Primary 和 Alternate的区别

...y assemblies. Falcon-unzip is perhaps the first to produce such assemblies for whole-genome shotgun data.Alternate assembly: an incomplete assembly consisting of haplotigs in heterozygous regions. An alternate assembly always accompanies a primary assembly. It is not useful by itself as it is fragme...

问题 使用ensembl下载的人gff3文件进行基因家族分析时,保留编码蛋白基因的命令无法识别人的gff3文件(描述中为日志)

...       * gene_id => merge_loci option deactivated => Machine information:         This script is being run by perl v5.22.1         Bioperl location being used: /share/work/biosoft/perl/perl-5.22.1/lib/site_perl/5.22.1/Bio/         Operating system being used: linux => A...

文章 批次效应移除算法

...ten overlooked complication with high-throughput studies is batch effects, which occur because measurements are affected by laboratory conditions, reagent lots, and personnel differences. This becomes a major problem when batch effects are confounded with an outcome of interest and lead to incorrect...

问题 老师您好,我是刚接触生物网络分析的小白,在我做otu table 共存网络分析时出现下面这种情况:

...or each taxaAbu[Abu<0.01]<-0#Filter taxa by abundance sumAbu<-Abu[which(rowSums(Abu)>10),]#Filter taxa by Occupancytable<-Abutable[table>0]<-1table1<-Abu[which(rowSums(table)>=100),]Abu<-table1data<-co_occurrence_network(Abu,0.5,0.001) 在这最后一步总是出现...

文章 linux常用技巧

...     echo "$(date) - $IO_MESSAGE" >> $LOGFILE    fi    # Wait for 10 minutes    sleep 600done 可以把该脚本用&挂在后台,该脚本可以让系统资源异常占用或磁盘快满的时候通知你