...DERATE or LOW impact).GENEGene name (usually HUGO)GENEIDGene ID)FEATUREThetypeof feature is in the next field (e.g. transcript, motif, miRNA, etc.)FEATUREIDTranscript ID (preferably using version number), Motif ID, miRNA, ChipSeq peak, Histone mark, depending on the annotation.BIOTYPEDescription o...
... -format => 'fasta');while ( my $seqobj = $in->next_seq() ) {
# the human read-able id ofthe sequence
my $id=$seqobj->id(); # string of sequence
my $seq=$seqobj->seq();
# a description ofthe sequence
my $desc=$seqobj->desc();
# one of 'dna','rna','protein' https://www.bi...
...message and exit
-i maffile, --maf maffile
input the maf file[required]
-m metadata, --meta metadata
input metadata file path[required]
-g group, --group group
input group id in metadata file to classification
...
...可以做的分析：
Indentify unique SNPs profiles and assign sequence types(MST);Calculate allele frequencies;Find informative SNPs;Calculate D (Index ofthe Discrininatory Ability);Find the set(s) of minimum SNPs;Output MST data file in mega and interleaved mega format.
输入的文件格式...
...vironment value of R_HOME
--> Q&A for bioinformatics, please visit the website: https://www.omicsclass.com/
--> R beginners ? I suggest your learning R language: https://study.omicsclass.com/index
Registered S3 methods overwritten by 'treeio':
method from
...
...[File Out]stdout -F过滤询问序列[String]TDUST with blastn, SEG with others-G打开gap得分[Integer]-1 -E延伸gap得分[Integer]-1 -XX dropoff value for gapped alignment (in bits)[Integer]0blastn 30, megablast 20, tblastx 0, all others 15-I显示gi号Show GI’s in deflines[T/F]F -q核酸...
...三种土壤条件，共测单细胞18个样本：
scRNA-seq of 10 wild type (X.kitaake) grown in gel conditions, 2 wilde type grown in non-compacted soil conditions and 2 wild type grown in compacted soil conditions. scRNA-seq of 2 kitaake grown in gel conditions, 2 Kitaake grown in non-compacted...