找到约 15 条结果

文章 基因家族docker 镜像使用方法

...要的ID删除,最终确认的ID存成新文件:WRKY_removed_redundant_and_confirmed_IDlist.txt#手动确认结构域,CDD,SMART,PFAM#确定分子量大小:http://web.expasy.org/protparam/#perl script/stat_protein_fa.pl WRKY_pep_need_to_confirm.fa WRKY_pep_need_to_confirm.MW.txt#三大数...

文章 heatmap_group_plot.r 分组热图展示免疫侵润结果

...apoptional arguments:  -h, --help            show this help message and exit  -i filepath, --input filepath                        input the immune res data,[required]  -m filepath, --metadata filepath                        input metadata file path[required]  -g gr...

文章 GATK报错| this implies a problem with the file locking support in your operating system

...错误;解决方法:在命令行中添加-disable_auto_index_creation_and_locking_when_reading_rods这个参数,表示禁止索引文件的自动生成和锁定;

文章 肿瘤的TNM分期讲解(stage)

...showing the T stages of bladder cancer Pathologic TNM staging of thymoma and related entities, AJCC 8th edition Definition / generalApplicable to thymoma, thymic carcinoma, thymic neuroendocrine tumors, combined thymic carcinomaFirst introduced in AJCC 8th edition (Amin: AJCC Cancer Staging Manua...

文章 rMATS turbo使用

...options] optional arguments: -h, --help show this help message and exit --version show program's version number and exit --gtf GTF An annotation of genes and transcripts in GTF format --b1 B1 A text file containing a comma separated list of the ...

文章 文献-子宫内膜癌-单细胞与空间转录组联合分享

... Yu X, Xie L, Ge J, Li H, Zhong S, Liu X. Integrating single-cell RNA-seq and spatial transcriptomics reveals MDK-NCL dependent immunosuppressive environment in endometrial carcinoma. Front Immunol. 2023 Apr 4;14:1145300. doi: 10.3389/fimmu.2023.1145300. PMID: 37081869; PMCID: PMC10110842. 数...

文章 看懂变异记录结果文件(VCF)

...一个典型VCF文件的示例(部分): 整体说明信息(Meta-information lines) VCF文件的开头是整体注释信息,通常以##作为起始,其后一般接以FILTER,INFO,FORMAT等字样。 例如:以##FILTER开头的行,表示注释VCF文件当中第7列中缩写词...

问题 TCGA数据生存时间怎么确定?

..."prior_tamoxifen_administered_usage_category" [57] "has_new_tumor_events_information"            "day_of_form_completion"                      [59] "month_of_form_completion"                    "year_of_form_completion"                     [61] "has_follow_up...

文章 细胞通讯cellchat结果介绍

...胞类群承担的任务角色分为out-degree, in-degree, betweenness和information四种角色。承担Out-degree角色的细胞类群被称为sender,这个角色被认为主要向外分泌配体传输信息,通过累加所有向外分泌配体的细胞通讯方式的可能性,得到sender...

问题 RNA-seq的转录水平表达分析HISAT, StringTie and Ballgown 中R语言的疑问。

你好。关于这篇文章https://www.jianshu.com/p/0e48facb3786,我试着用自己的数据去跑这个流程,前面都很顺利,就是在比较男女之间基因表达差异那里出了错误,因为我的数据是从小米的根,茎,叶三个不同组织里得到的,所以我想比...

问题 老师,这个警告问题大不大

...econdary GFM file: Amphitetranychus_viennensis.genome.2.ht2Re-opening _in1 and _in2 as input streamsReturning from GFM constructorWarning: a local graph exploded (offset: 1239040, length: 57344)Warning: a local graph exploded (offset: 68216166, length: 57344)Returning from initFromVector

文章 组装好的基因组通过agp文件得到contig序列

...omagp JM-2.swapped.agp assembly.fasta contigs.fasta The assembly.fasta and contigs.fasta are two FASTA files from scaffolded assembly, and contigs, respectively. This generates assembly.swapped.chain file which you could then use in liftOver, in the direction from assembly to contigs, as me...

问题 最新qiime2教程16S注释报错

... section for more details. The smallest eigenvalue is -0.05473873232362785 and the largest is 2.538043724148074.   warn( Running external command line application. This may print messages to stdout and/or stderr. The command being run is below. This command cannot be manually re-run as it will d...

文章 核苷酸替换模型-GTR是所有模型中考虑参数最多最复杂的模型,其他所有模型是GTR模型的特例

...ns equally likely (PAUP* rate classification: aaaaaa, PAML: aaaaaa) (Jukes and Cantor 1969) Felsenstein 1981 (F81, nst=1): variable base frequencies, all substitutions equally likely (PAUP*: aaaaaa, PAML: aaaaaa) (Felsenstein 1981) Kimura 2-parameter (K80, nst=2): equal base frequencies, one trans...

问题 安装ggpubr 报错

...eter/R/x86_64-pc-linux-gnu-library/3.4/lme4’ libtool: link: ERROR: no information for variable 'AR' cru .libs/libutil.a .libs/mt19937ar.o .libs/sobolseq.o .libs/timer.o .libs/stop.o .libs/redblack.o .libs/qsort_r.o .libs/rescale.o checking for ranlib... ERROR: no information for variable 'RANL...