找到约 15 条结果

文章 肿瘤的TNM分期讲解（stage）

...showing the T stages of bladder cancer Pathologic TNM staging of thymoma and related entities, AJCC 8th edition Definition / generalApplicable to thymoma, thymic carcinoma, thymic neuroendocrine tumors, combined thymic carcinomaFirst introduced in AJCC 8th edition (Amin: AJCC Cancer Staging Manua...

文章 rMATS turbo使用

...options] optional arguments: -h, --help show this help message and exit --version show program's version number and exit --gtf GTF An annotation of genes and transcripts in GTF format --b1 B1 A text file containing a comma separated list of the ...

问题 老师，这个警告问题大不大

...econdary GFM file: Amphitetranychus_viennensis.genome.2.ht2Re-opening _in1 and _in2 as input streamsReturning from GFM constructorWarning: a local graph exploded (offset: 1239040, length: 57344)Warning: a local graph exploded (offset: 68216166, length: 57344)Returning from initFromVector

问题 RNA-seq的转录水平表达分析HISAT, StringTie and Ballgown 中R语言的疑问。

你好。关于这篇文章https://www.jianshu.com/p/0e48facb3786，我试着用自己的数据去跑这个流程，前面都很顺利，就是在比较男女之间基因表达差异那里出了错误，因为我的数据是从小米的根，茎，叶三个不同组织里得到的，所以我想比...

文章 组装好的基因组通过agp文件得到contig序列

...omagp JM-2.swapped.agp assembly.fasta contigs.fasta The assembly.fasta and contigs.fasta are two FASTA files from scaffolded assembly, and contigs, respectively. This generates assembly.swapped.chain file which you could then use in liftOver, in the direction from assembly to contigs, as me...

文章 看懂变异记录结果文件（VCF）

...一个典型VCF文件的示例（部分）： 整体说明信息（Meta-information lines） VCF文件的开头是整体注释信息，通常以##作为起始，其后一般接以FILTER，INFO，FORMAT等字样。 例如：以##FILTER开头的行，表示注释VCF文件当中第7列中缩写词...

问题 最新qiime2教程16S注释报错

... section for more details. The smallest eigenvalue is -0.05473873232362785 and the largest is 2.538043724148074.   warn( Running external command line application. This may print messages to stdout and/or stderr. The command being run is below. This command cannot be manually re-run as it will d...

文章 核苷酸替换模型-GTR是所有模型中考虑参数最多最复杂的模型，其他所有模型是GTR模型的特例

...ns equally likely (PAUP* rate classification: aaaaaa, PAML: aaaaaa) (Jukes and Cantor 1969) Felsenstein 1981 (F81, nst=1): variable base frequencies, all substitutions equally likely (PAUP*: aaaaaa, PAML: aaaaaa) (Felsenstein 1981) Kimura 2-parameter (K80, nst=2): equal base frequencies, one trans...

问题 TCGA数据生存时间怎么确定？

..."prior_tamoxifen_administered_usage_category" [57] "has_new_tumor_events_information"            "day_of_form_completion"                      [59] "month_of_form_completion"                    "year_of_form_completion"                     [61] "has_follow_up...

文章 细胞通讯cellchat结果介绍

...胞类群承担的任务角色分为out-degree, in-degree, betweenness和information四种角色。承担Out-degree角色的细胞类群被称为sender，这个角色被认为主要向外分泌配体传输信息，通过累加所有向外分泌配体的细胞通讯方式的可能性，得到sender...

问题 利用cicro绘图时遇到错误

... ERROR ***       cwd: /work/my_gene_family/09.circos       command: /share/work/biosoft/circos/latest/bin/circos -conf config.txt       -outputdir ./ -outputfile HSP90   You have asked to draw [1190] ideograms, but the maximum is currently set at   [200]. To increase this numbe...

文章 ggtern 安装报错

** inst ** byte-compile and prepare package for lazy loading Error in get(x, envir = ns, inherits = FALSE) :    object 'message_wrap' not found Error: unable to load R code in package ‘ggtern’ Execution halted ERROR: lazy loading failed for package ‘ggtern’ * removing ‘/share/bios...

问题 安装ggpubr 报错

...eter/R/x86_64-pc-linux-gnu-library/3.4/lme4’ libtool: link: ERROR: no information for variable 'AR' cru .libs/libutil.a .libs/mt19937ar.o .libs/sobolseq.o .libs/timer.o .libs/stop.o .libs/redblack.o .libs/qsort_r.o .libs/rescale.o checking for ranlib... ERROR: no information for variable 'RANL...

文章 python版本MCScanX分析方法

...析方法，仅供参考： Genomic synteny among C. annuum, C.chinenese and C.baccatum The genomes of C. annuum, C.chinenese and C.baccatum were retrieved from PGP (http://peppergenome.snu.ac.kr/download.php).The C. annuum genome was compared to C.chinenese and C.baccatum  genomes using the M...

文章 topGO报错

...                                     "('", ontology, "') AND go_id IN (", qTerms, ");",                                     sep = ""))                    termsNames <- retVal$term          names(termsNames) <- retVal$go_id            ...