...re probes in the design. The fourth column of the file contains annotation information. You can use this file for assessing coverage metrics.
[design ID]_Padded.bed - This BED file contains a single track of the genomic regions that you can expect to sequence when using the design for target enric...
...dom effects. Including random effects gives MLM the
ability to incorporate information about relationships among individuals. When a genetic marker based kinship
matrix (K) is used jointly with population structure (Q), the “Q+K” approach improves statistical power compared
to “Q” only9
. ML...
... for main workspace.--vcf: LDfiltered-temporary.bed + LDfiltered-temporary.bim +LDfiltered-temporary.fam written.9696 variants loaded from .bim file.9696 missing IDs set.114 people (0 males, 0 females, 114 ambiguous) loaded from .fam.Ambiguous sex IDs written to LDfiltered.nosex .--extract: 435 vari...
...4967295)
# process 7129465 characters per dot
/usr/bin/mummer: suffix tree construction failed: textlen=712946597 larger
than maximal textlen=536870908
ERROR: mummer and/or mgaps returned non-zero
...main differences between the indexed clinical and XML files:
XML has more information: radiation, drugs information, follow-ups, biospecimen, etc. So the indexed one is only a subset of the XML filesThe indexed data contains the updated data with the follow up information. For example: if the patie...
...MB for main workspace.--vcf: plink_pca-temporary.bed + plink_pca-temporary.bim +plink_pca-temporary.fam written.2045265 variants loaded from .bim file.2045265 missing IDs set.684 people (0 males, 0 females, 684 ambiguous) loaded from .fam.Ambiguous sex IDs written to plink_pca.nosex .Using up to 23 ...
...太长不读版：
DevOps (a clipped compound of “development” and “operations”) is a software development and delivery process that emphasizes communication and collaboration between product management, software development, andoperations professionals.It seeks to automate the process of ...
... sequence was soft-masked with RepeatMasker. Within BRAKER2, AUGUSTUS
uses information on soft-masked regions at the gene prediction step and reduces the probability of coding exon
prediction in repeat regions. GeneMark-ES and -EP+ do hard-masking of soft-masked repeats longer than
1000 nt for genom...
...mina sequencing
Genomic DNA from each sample was prepared for libraries construction. The library preparations were sequenced by using an Illumina HiSeqX platform and 150bp paired-end reads were generated.
Data filtering and alignment
The recently released genome of Agaricus_bisporus_var_bi...
...ion script (bash|zsh|fish|powershell) version print version informationand check for updateFlags: --alphabet-guess-seq-length int length of sequence prefix of the first FASTA record based on which seqkit guesses t...
...源基因研究真菌遗传进化的方法，可以参考：
Species tree constructionand gene family expansion analysis
Together with L.edodes, 26 fungal species assigned to Basidiomycota or Ascomycota were used
in the phylogenetic analysis. The protein sequences of these 26 fungi were compared...
...AT=<ID=PGT,Number=1,Type=String,Description="Physical phasing haplotype information, describing how the alternate alleles are phased in relation to one another">##FORMAT=<ID=PID,Number=1,Type=String,Description="Physical phasing ID information, where each unique ID within a given sample (bu...
...A level change, protein level change.SIFT_scoreSIFT score. See the dbNSFP information table for details.SIFT_predSIFT prediction. See the dbNSFP information table for details.Polyphen2_HDIV_scorePholyphen2 score based on HDIV. See the dbNSFP information table for details.Polyphen2_HDIV_predPho...