存储满了吧,用下面的命令查看一下存储情况:
df -h
du -h -d 1
gatk --java-options "-Xmx200g" GenomicsDBImport \
-L CHR.list --tmp-dir $tmpdir -R $REF --batch-size 5 \
--reader-threads 5 --max-num-intervals-to-import-in-parallel 5 \
--genomicsdb-workspace-path db --sample-name-map cohort.sample_map