马杰宇
马杰宇

性别: 注册于 2022-06-22

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2024-03-21 09:41 回答问题

报错是这样的:WARN  GenomicsDBImport - GenomicsDBImport cannot use multiple VCF reader threads for initialization when the number of intervals is greater than 1. Falling back to serial VCF reader initialization.

2024-03-20 09:48 发起提问

2024-02-19 16:40 回答问题

以下是我的命令:/public/software/singularity/bin/singularity exec /public/home/perl5/gwas-sif/reseq.sif \ bash -c "gatk  --java-options "-Xmx20g" GenomicsDBImport  \   -L chr.list --tmp-dir $tmpdir  -R $REF --batch-size 5 \   --reader-threads 5 --max-num-interv

2024-02-19 16:38 发起提问

2024-01-24 15:45 回答问题

老师,我在集群上重新下载了pop-evol-gwas.sh, 重新在课上的公众号下载了脚本,然后再运行GAPIT关联分析,但是还是有问题。Error in scan(file = file, what = what, sep = sep, quote = quote, dec = dec,  :    line 1 did not have 3 elements Calls: read.table -> scan In addition: Warning messages: 1: In rea

2024-01-23 11:43 发起提问

2024-01-18 22:28 回答问题

root@77146ac2bf18  21:42:19 /work/my_gwas/09.gwas_emmax]# emmax-kin-intel64 -v -d 10 -o ./pop.kinship.BN snp_var Reading TFAM file snp_var.tfam .... Memory allocated, nrows = 258, nheadercols = 6, nvaluecols = 0 Freeing cmat Freeing cheaders Memory

2024-01-18 22:21 发起提问

2024-01-18 17:31 回答问题

/biosoft/GAPIT3.0/gapit_functions.txt我找到了这个路径,发现没有这个文件,包括emma.txt,FarmCPU_functions.txt都没有

2024-01-18 14:45 发起提问