找到约 15 条结果

文章 TCGA的ENSEMBL编号转换成gene symbol

...NAME"), OrgDb="org.Hs.eg.db") 'select()' returned 1:1 mapping between keys and columns # 查看转换的结果 > gene_ids ENSEMBL SYMBOL GENENAME 1 ENSG00000000971 CFH complement factor H 2 ENSG00000001084 ...

文章 IF=6.68| HCC肝癌单细胞数据挖掘实践

...现,有些亚类细胞只在肝癌细胞中出现(clusters 8, 13, 16, and 17),其Marker基因为:HCC markers (GPC3, CD24, and MDK)。进一步通过拟时序分析这4个亚类细胞(clusters 8, 13, 16, and 17),得到4个cluster,其中cluster 0是最初始细胞亚类,发现PGLS...

文章 igraph 报错: libglpk.so.36: cannot open shared object file: No such file or directory

** demo ** inst ** byte-compile and prepare package for lazy loading ^A** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Error: package or namespace load failed fo...

问题 map bwa出错

...SQ line "VBZB010" with no LN: tag samtools view: failed to add PG line to the header 但grep   .fa文件后。 1到>29 dna:primary_assembly primary_assembly:LU_Bosgru_v3.0:29:1:46153303:1 REF >X dna:primary_assembly primary_assembly:LU_Bosgru_v3.0:X:1:136336377:1 REF >Y dna:primary_a...

文章 PBS 命令

...令—用于队列管理          qmgr -c "create queue batch queue_type=execution"          qmgr -c "set queue batch started=true"          qmgr -c "set queue batch enabled=true"          qmgr -c "set queue batch resources_default.nodes=1"          qmgr -c "set queue b...

问题 问题:"不能为虚拟电脑 Bio-Linux-8.0.7 打开一个新任务",已经按照提示看了自己的虚拟化设置是打开的,但还是下面的结果,求解答!

不能为虚拟电脑 Bio-Linux-8.0.7 打开一个新任务. The virtual machine 'Bio-Linux-8.0.7' has terminated unexpectedly during startup with exit code 1 (0x1). More details may be available in 'D:\软件安装包\VM\Bio-Linux-8.0.7\Logs\VBoxHardening.log'. 返回 代码: E_FAIL (0x80004005)...

文章 docker容器下mysql数据库还原与备份

...delete" == "ON" -a "$backup_location" != "" ];then`find $backup_location/ -type f -mtime +$expire_days | xargs rm -rf`echo -e "\033[32m ------------------- MySQL数据库已备份 $expire_days天前的备份已删除---------------- \033[0m" #greenfi 复制代码 2、执行定时计划,每天...

文章 进化树中如何添加分组圆环

...的格式: DATASET_COLORSTRIP#lines starting with a hash are comments and ignored during parsingSEPARATOR TABDATASET_LABEL color_strip2STRIP_WIDTH 25MARGIN 0BORDER_WIDTH 1BORDER_COLOR #000SHOW_INTERNAL 0DATA160232    #efff2213773    #efff2256636    #efff22111955    #efff222...

文章 IF=4.3 | 秋茄树SOS1基因家族分析

...MC Plant Biology》发表了一篇题为“SOS1 gene family in mangrove (Kandelia obovata): Genome-wide identification, characterization, and expression analyses under salt and copper stress”的SOS1基因家族分析文章。” SOS(salt overly sensitive)是协调耐盐相关的信号通路...

问题 使用xpclr_smooth_line_plot.r绘制时,没有报错,但没有图片生成

...n all.chr.xpclr.smoothline --> Q&A for bioinformatics, please visit the website: https://www.omicsclass.com/ --> R beginners ? I suggest your  learning  R language: https://study.omicsclass.com/index Loading required package: ggplot2 chr_name =  1 chr_name =  8 chr_name =  15 chr_name...

文章 使用R语言安装包编译时gcc标准报错——“error: for loop initial declarations are only allowed in C99 mode”

...。 参考内容:https://stackoverflow.com/questions/35198301/how-use-the-option-std-c99-for-installing-r-packages

问题 转录组上游分析之定量比对Hisat2出现内部异常错误

...; file cannot also be specified.  Please run HISAT2 separately for mates and singles. Error: Encountered internal HISAT2 exception (#1) Command: /home/vip6/miniconda3/envs/rna/bin/hisat2-align-s --wrapper basic-0 -p 3 -S /home/vip6/project/human-64-Asthma-Trans/Mapping/Hisat//SRR1039508.Hisat_al...

文章 WGCNA 根据KME值筛选hub基因

...)值来筛选hub基因:Hub genes are those that show most connections in the network as indicated by their high KME (eigengene connectivity) value 代码部分很简单,输出所有的基因与模块的KME矩阵,然后筛选每个模块中kme最大的前几个基因就是hub基因: #merg...

文章 GFF3格式说明

...+       .       ID=FBtr0300690;Parent=FBgn0031208;Name=CG11023-RC;biotype=protein_coding;transcript_id=FBtr03006902L      FlyBase five_prime_UTR  7529    7679    .       +       .       Parent=FBtr03006902L      FlyBase exon    7529    8116    .       +       . ...

问题 R语言绘制数据地图中使用tmap程序包绘制的时候,想对图例的字体格式进行修改,不知该用什么参数,求大神指教!

...d = 1) +   tm_scale_bar(position=c("left", "bottom")) +    tm_compass(type = "4star", position=c("left", "top")) +        tm_layout(inner.margins=c(0.12,0.03,0.08,0.03))