...urce* package 'GO.db' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'GO.db'
finding HTML links ... ºÃÁË
GOBASE html
GOBPANCESTOR htm...
...he root of the dendrogram is linked to the root of each type's dendrogram, which leads to having all of them on the same level). The first color column is of a single color as k_obs_groups is not used when clustering by annotation. The second color column indicates the annotation matching to each ce...
...ckage:stats’:
hclust
Error: package or namespace load failed for ‘WGCNA’ in rbind(info, getNamespaceInfo(env, "S3methods")):
number of columns of matrices must match (see arg 2)
...r: countsvst.flavor='v2' set. Using model with fixed slope and excluding poisson genes.Variance stabilizing transformation of count matrix of size 20445 by 2713Model formula is y ~ log_umiGet Negative Binomial regression parameters per geneUsing 2000 genes, 2713 cellsError: useNames = NA is defunct....
Error response from daemon: pull access denied for it, repository does not exist or may require 'docker login': denied: requested access to the resource is denied.
麻烦老师解答一下，之前听docker blast那里挺顺利的，在基因家族分析课这里卡住了
** demo
** inst
** byte-compile and prepare package for lazy loading
^A** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed fo...
...ht, SofaAnstieg, Hauotdiagnos...
lgl (1): Groupf
ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
Error in `select()`:
! Can't subset columns with `metaData[, 1, drop = T]`.
✖ Can...
... RootAge = <0.9 * safe constraint on root age, used if no fossil for root.
model = 4 * 0:JC69, 1:K80, 2:F81, 3:F84, 4:HKY85
alpha = 0.5 * alpha for gamma rates at sites
ncatG = 5 * No. categories in discrete gamma
cle...
...ct sample.clean.bam draft.asm.fasta --RE GATC
## 排序和方向优化
for K in `seq 1 $k`;
do
allhic optimize sample.clean.counts_GATC.${k}g${K}.txt sample.clean.clm
done
报错## 排序和方向优化
[root@90227036c754 20:53:04 /work/my_LQ28473/30.ALLHiC1]# for K in `seq 1 $k...
I am doing scRNA-Seq analysis, and I am doing RNA velocity and pseudotime analyses as part of my analysis pipeline. Now, RNA velocity is carried out using scvelo, and this package generates a metric known as latent time. I am having a very had time seeing the difference between latent time and stand...
...out_dir)count=0total=0output_handle = open(dout+'/'+args.prefix+'.fa', "w")for rec in SeqIO.parse(args.fasta, "fasta"): seq=str(rec.seq) #seq=seq.upper() total+=1 if(len(seq)>=args.len and re.search("^ATG",seq,re.I) and len(seq)%3==0): if re.search('TAG$',seq,re.I) ...
...38:39)[GCC 6.4.0] on linuxType "help", "copyright", "credits" or "license" for more information.>>> import rpy2.robjects as robjError: package or namespace load failed for ‘methods’ in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/share/work/biosoft/R/R-v4.0.3/...
...3 --filename GCA_027406505.1.zip
3. 帮助信息
./datasets --helpData Retrieval Commands summary Print a data report containing gene, genome or virus metadata download Download a gene, genome or virus dataset as a zip file 下载的结果是：ncbi_dataset.zip rehydrate Re...
... to that subroutine. # Inside a subroutine, @_ is the default array for the array operators push, pop, shift, and unshift.
my $url = 'http://www.taobao.com'; die "no url param!\n" unless $url; # create LWP::UserAgent object
my $ua = LWP::UserAgent->new;
# set ...