...is not a(n) PairedEndFastqManifestPhred33V2 file:
Filepath on line 3 and column "forward-absolute-filepath" could not be found ($datadir/AWGB16SAA2134120-38-28_R1.fq.gz) for sample "AWGB16SAA2134132-38-28".
...z /home/wanghj
2，监控系统内存，i/o及存储等
#!/bin/bash# Set the threshold valuesDISK_THRESHOLD=90LOAD_THRESHOLD=20MEMORY_THRESHOLD=50IO_THRESHOLD=50# User to write the messageUSERNAME="wanghj"# Log fileLOGFILE="/home/wanghj/logfile.log"while true; do # Check disk usage DISK_...
....1.4/Libraries/test/RepeatMasker.libNew DB title: RepeatPeps.libSequence type: NucleotideDeleted existing Protein BLAST database named /share/work/biosoft/RepeatMasker/RepeatMasker-4.1.4/Libraries/test/RepeatPeps.libKeep MBits: TMaximum file size: 1000000000Bsh: line 1: 14163 Bus error ...
manager@bl8vbox[manager] sudo mount -t vboxsf windows-share xu-share
[sudo] password for manager:
/sbin/mount.vboxsf: mounting failed with the error: No such device
...summarise()` has grouped output by 'Pathway_Class'. You can override using the `.groups` argument.
Error in (function (classes, fdef, mtable) :
unable to find an inherited method for function ‘select’ for signature ‘"tbl_df"’
Calls: %>% -> select -> <Anonymous>
停止...
> library(qqman)
> results_log = read.table("logistic_results.assoc.logistic", head=TRUE)
Error in file(file, "rt") : cannot open the connection
In addition: Warning message:
In file(file, "rt") :
cannot open file 'logistic_results.assoc.logistic': No such file or directory
...采用如下的代码实现。
#!/usr/bin/perl -w
use strict;
my $biotype_file = shift @ARGV;
my $gtf = shift @ARGV;
my $biotype = shift @ARGV;
my %biotype_list;
open my $fh1, $biotype_file or die;
while (<$fh1>) {
chomp;
my @array = split /\t/, $_;
if($array[2]eq $biotype){
...
7 The following object is masked from ‘package:VennDiagram’: 8 9 ellipse 10 11 Error in dyn.load(file, DLLpath = DLLpath, ...) : 12 unable to load shared object '/share/work/biosoft/R/R-v4.2.0/lib64/R/library/units/libs/units.so': ...
...ction2 二代组装：spades assemblies3 混合组装：assembling contigs and long reads with miniasm4 比对：aligning reads5 搭桥：building long read bridges6 抛光：polishing assembly with pilon
组装结果
参考：https://www.jianshu.com/p/6ac7762a8f3a
...后续进行网络网络设置，例如：
miRNA
Target
pathway
type
ath-miR156a-3p
AT1G65440
A
A
ath-miR156a-3p
AT3G06340
A
A
ath-miR156a-3p
AT5G58220
A
A
ath-miR156a-5p
AT1G08590
A
A
ath-miR156a-5p
AT1G19800
A
A
ath-miR156a-5p
AT1G72700
A
A
ath-m...