...后直接修改是不行的 先转化成tsv biom convert -i bak/feature_table_tax.biom -o feature_table_tax.tsv --to-tsv --header-key taxonomys less feature_table_tax.tsv # Constructed from biom file #OTU ID FT-1 CKR-4 CK0-1 CKR-5 FTR-4 CK0-5 CKR-1 FTR-5 FT-2 FT-3 CKR-3 ...
$ python2.7 -m jcvi.graphics.karyotype --format=pdf --figsize=15x5 hv_at_mcscan_seqid hv_at_mcscan_layout 17:22:57 [base] Load file `hv_at_mcscan_layout` 17:22:57 [base] Load file `hv.bed` 17:22:58 [base] Load file `at.bed` Traceback (most recent call last): File "/home/chenxh/miniconda3...
...0后就出现了以下问题。 这是我的代码：Rscript $scripts/cell_trajectory_monocle3.r --rds ../05.Find_Markers/CD4.added.celltype.rds \ --use.seurat.umap --groupby mycelltype -o monocle3.1 --cpu 4 这是CD4.added.celltype.rds的内容：barcodeorig.identnUMInGenegrouppercent_mitoper...
...有qimme格式检查都正确，依旧报错，报错内容如下： pick_de_novo_otus.py -i qiime.fasta -f -o pick_de_novo_otus \ > -p otu_params_de_novo.txt /biosoft/miniconda/envs/qiime1/lib/python2.7/site-packages/matplotlib/font_manager.py:273: UserWarning: Matplotlib is building t...
...老师讲的输入命令，命令如下： hisat2 -p 1 --rg-id=SRR1107723_1 --rg SM:SRR1107723_1 --rg LB:SRR1107723_1 --rg PL:ILLUMINA -x $REF_INDEX --dta -1 $workdir/2.data_qc/SRR1107723_1.clean.fq.gz -S SRR1107723_1.sam 2>SRR1107723_1.summary 结果中只有SRR1107723_1.summary，打开SRR110...
...样存贮。 以下实例中文件有 main 和 Foo 包。 特殊变量 __PACKAGE__ 用于输出包名： 实例#!/usr/bin/perl # main 包$i = 1; print"包名 : " , __PACKAGE__ , "$i\n"; package Foo; # Foo 包$i = 10; print"包名 : " , __PACKAGE__ , "$i\n"; package main; # 重新指定...
...ecent call last): File "/share/work/biosoft/python/Python3/bin/picrust2_pipeline.py", line 4, in <module> __import__('pkg_resources').run_script('PICRUSt2==2.5.2', 'picrust2_pipeline.py') File "/share/work/biosoft/python/Python-v3.9.16/lib/python3.9/site-packages/pkg_resources/_...