...，bed文件路径（绝对路径）
config-hicpro.txt
# Please change the variable settings below if necessary########################################################################### Paths and Settings - Do not edit !#########################################################################...
...e/work/perl/perl-v5.14.2 -Accflags='-fPIC'
make
make install
Note that in the command above, -fPIC is needed for x86_64 system, and -Duseithreads are highly recommended to enable threading functionality in Perl (though not used in PennCNV per se).
然后再把这个版本的perl添加到PATH...
...nstall.packages("CMplot")library(CMplot)#(optional)if you want to use the latest version:#source("https://raw.githubusercontent.com/YinLiLin/R-CMplot/master/R/CMplot.r")
加载示例数据
> data(pig60K) #calculated p-values by MLM> head(pig60K) SNP Chrom...
...ter 'test', {NAME=>'cf2',METHOD=>'delete'}
Updating all regions with the new schema...
1/1 regions updated.
Done.
Took 2.0665 seconds
4. 列出所有Hbase里的表
hbase(main):013:0> list
TABLE
table ...
...分类器：https://forum.qiime2.org/t/processing-filtering-and-evaluating-the-silva-database-and-other-reference-sequence-data-with-rescript/15494
#remove sequences that contain 5 or more ambiguous bases (IUPAC compliant ambiguity bases) and any homopolymers that are 8 or more bases in length
q...
...，合理的选择阈值。
参考文献：
[1] Edgar, R.C. Updating the 97% identity threshold for 16S ribosomal RNA OTUs. (2017). doi:https://doi.org/10.1101/192211
[2] Callahan,B. J., P. J. McMurdie, M. J. Rosen, A. W. Han, A. J. A. Johnson and S. P.Holmes (2016). "DADA2: High-resolutio...
...ion criterion (AIC),* corrected Akaike information criterion* (AICc), and* the Bayesian information criterion* (BIC)三个结果标准值，通常ModelFinder选择BIC分数最低的模型（当然也可以指定AIC和AICc通过指定选项-AIC或者-AICc)。如果你想节约时间，可指定选择...