找到约 15 条结果

文章 Bio-Linux中的生物信息学软件

... parallel, sequence assembler for short readsampliconnoise1.29Programs for the removal of noise from 454 sequenced PCR ampliconsarb5.5No descriptionarchaeopteryx0.972.beta9MA phylogenetic tree viewer and editorartemis16.0.0Free genome viewer and annotation toolassembly-conversion-tools0.01Conversion...

文章 GWAS抗性性状处理,耐盐,耐寒,耐旱等

...查处理和对照的多种性状数据,然后计算抗性指数:  The response of the genotypes to salt stress was expressed using the stress susceptibility index (SSI) calculated according to Fischer and Maurer39 using the following formula: SSI = (1 − Ys/Yp)/D, where Ys = mean performa...

文章 教你如何使用u盘安装Linux系统

... 版本说明 CentOS-7-x86_64-DVD-2009.iso This DVD image contains all the packages that can be installed using the installer. This is the recommended image for most users. CentOS-7-x86_64-NetInstall-2009.iso This is the network install and rescue image. The installer will ask from where...

文章 qiime2自己建立分类器 greengene

...作为参考物种注释 # 导入参考序列 qiime tools import \   --type 'FeatureData[Sequence]' \   --input-path gg_13_8_otus/rep_set/99_otus.fasta \   --output-path 99_otus.qza # 导入物种分类信息 qiime tools import \   --type 'FeatureData[Taxonomy]' \   --input-format Head...

问题 基因组比对

...相关的课程呀?We analysed gene families shared between ash and 10 other species (Supplementary Table 10). In total, 279,603 proteins (77.14% of the input sequences) clustered into 27,222 groups, of which 4,292 contained sequences from all species, 3,266 were angiosperm-specific and 462 Eudico...

文章 核苷酸替换模型-GTR是所有模型中考虑参数最多最复杂的模型,其他所有模型是GTR模型的特例

...evomics.org/resources/substitution-models/nucleotide-substitution-models/ The use of maximum likelihood (ML) algorithms in developing phylogenetic hypotheses requires a model of evolution. The frequently used General Time Reversible (GTR) family of nested models encompasses 64 models with differe...

问题 老师 你好,我通过Git bash利用代码 tcga_gene_exp_download下载数据提示terminate called after throwing an instance of 'std::bad_alloc' what(): std::bad_alloc,无法分析后续数据

文章 鉴定组装植物病毒——系统详尽的植物病毒学!

.... . . . ................. . . . 12 RT-PCR and Real-Time RT-PCR Methods for the Detectionof Potato Virus Y in Potato Leaves and Tubers. . . ......................................................................  133 A New Method to Isolate Total dsRNA. . . . . . . ......................................

文章 Cufflinks,Stringtie 合并转录本之后,如何筛选新转录本?

...ses of a reference transcript)8rRepeat. Currently determined by looking at the soft-masked reference sequence and applied to transcripts where at least 50% of the bases are lower case9uUnknown, intergenic transcript10xExonic overlap with reference on the opposite strand11sAn intron of the transfrag ...

问题 关于使用nohup vcftools过滤vcf文件的问题

...ER=<ID=LowQual,Description="Low quality">##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">...

文章 plot单独画出pheatmap返回的聚类结果(聚类树)

... 2、而将hclust结果转换成另类树形图as.dendrogram()可以选择type画出其他形状的树形图: 这个树形图一共包含两个type,可以查询?as.dendrogram() 或者?plot.dendrogram得知 > plot(as.dendrogram(list$tree_row),type = "triangle") 或者: > plot(as....

文章 dQTL.seq方法研究基因定位

.../GATK/latest/gatk VariantsToTable -V all_sample_snp.vcf -F CHROM -F POS -F TYPE -GF AD -O output.table 利用VariantsToTable工具进行格式转换 -V:输入文件 -F:提取任一.vcf列,且每个字段将占据输出文件中的一列。这里命令行中只提取了CHROM、POS、TYPE三...

文章 ssgsea_enrich_diff.r GSVA富集分析

...R Input gene expression file path[required] -m META, --meta META Input the clinical information file path that contains the grouping[required] -n GROUP_NAME, --group_name GROUP_NAME Specifies the column name that contains grouping ...

文章 生信挖掘GEO+TCGA 文献速览

“AKAP12 and RNF11 as Diagnostic Markers of Fibromyalgia and Their Correlation with Immune Infiltration”,这篇文章于2022年10月4日发表在Oxid Med Cell Longev期刊上,影响因子为7.31。纤维肌痛(FM)是一种慢性非关节风湿性疾病,主要特征为弥漫性播散性...

文章 安捷伦Agilent 外显子捕获试剂盒捕获区域bed文件下载

...ichment_design_files_available_for_download.htm BED files You can import these files into a compatible genome browser to graphically view the locations of the tracks in the genome. [design ID]_Covered.bed - This BED file contains a single track of the genomic regions that are covered by one or m...