找到约 15 条结果

文章 生信挖掘GEO+TCGA 文献速览

“AKAP12 and RNF11 as Diagnostic Markers of Fibromyalgia and Their Correlation with Immune Infiltration”,这篇文章于2022年10月4日发表在Oxid Med Cell Longev期刊上,影响因子为7.31。纤维肌痛(FM)是一种慢性非关节风湿性疾病,主要特征为弥漫性播散性...

问题 在docker中用cleandata与宿主序列比对得到sam文件这一步出现错误,

...ie2 --threads 6 \ -x $host_index/Canis_lupus/wolf \ -1 $workdir/1.host_del_and_qc/cleandata/${i}_1.fastq \ -2 $workdir/1.host_del_and_qc/cleandata/${i}_2.fastq \ -S $workdir/1.host_del_and_qc/cleandata/${i}.bowtie.sam \ --very-sensitive-local \ 2>$workdir/1.host_del_and_qc/cleandata/${i}.bowtie.m...

问题 Picard sortsam排序

...Picard's command line syntax is changing. ********** ********** For more information, please see: ********** https://github.com/broadinstitute/picard/wiki/Command-Line-Syntax-Transition-For-Users-(Pre-Transition) ********** ********** The command line looks like this in the new syntax:

文章 1000G千人基因组计划人群缩写对照表

...City, Vietnam EAS 1 1 1 CEU Utah Residents (CEPH) with Northern and Western European Ancestry EUR 1 1 1 TSI Toscani in Italia EUR 1 1 1 FIN Finnish in Finland EUR 1 1 1 GBR British in England and Scotland EUR 1 1 1 IBS Iberian Population in Sp...

问题 qiime2 v1.4版,用data2生成特征表时出错,应该怎么解决? Plugin error from dada2: An error was encountered while running DADA2 in R (return code 1), please inspect stdout and stderr to learn more. Debug info has been s

文章 qiime1 matplotlab绘图报错解决:_tkinter.TclError: no display name and no $DISPLAY environment variable

Command run was: plot_taxa_summary.py -i /share/nas1/huangls/test/ampliseq-q1/16s2/4.Qiime_analysis/taxa_summary_plot/otu_table_no_singletons_rare_sorted_L2.txt,/share/nas1/huangls/test/ampliseq-q1/16s2/4.Qiime_analysis/taxa_summary_plot/otu_table_no_singletons_rare_sorted_L3.txt,/share/nas1/huangl...

问题 MCScanX报错

Reading control file error: For input string: "800     //plot width and height (in pixels)" Exception in thread "main" java.lang.IllegalArgumentException: Width (0) and height (0) cannot be <= 0 at java.awt.image.DirectColorModel.createCompatibleWritableRaster(DirectColorModel.java:1016) at...

问题 plink报错

使用plink将vcf转tped格式的时候出现这个报错Error: .bim file has a split chromosome.  Use --make-bed by itself to remedy this. 添加 --make-bed后依旧没有解决

文章 你还在为基因芯片表达差异分析发愁吗?这个方法带你飞!

...理,分组信息大致如下,并基于分组信息构建分组矩阵(design): > group         TreatmentGSM49939   CONTROLGSM49940   CONTROLGSM49941   CONTROLGSM49942  INFECTEDGSM49943  INFECTEDGSM49944  INFECTED > design = model.matrix(~ Treatment + 0...

文章 群体遗传进化与GWAS分析动植物文献

...群体进化-2012·        文章:Whole-genome sequencing of giant pandas provides insights into demographic history and local adaptation·        基础数据:34只熊猫,4.7x覆盖深度 NC-牦牛群体进化-2015·        文章:Yak whole-genome resequencing reveals domestic...

问题 plink 报错

Error: --set-missing-var-ids requires a sorted .bim file.  Retry this command after using --make-bed 之前的vcf文件运行用样的命令就不会出错呢,这难道是vcf文件位置顺序不对?

问题 基因组比对

...有没有相关的课程呀?We analysed gene families shared between ash and 10 other species (Supplementary Table 10). In total, 279,603 proteins (77.14% of the input sequences) clustered into 27,222 groups, of which 4,292 contained sequences from all species, 3,266 were angiosperm-specific and 4...

文章 Evolview绘制进化树时添加热图

...umber between 0 to 1opacity of the datasetmodifiers shared with Bar Charts and Dot plotsmodifiers that apply to both Bar Charts, Dot Plots and Heatmap!gridlabel or !axis or !showHeatMapColumnLabelnone, or any integer; 0 : hide column labels; >= 1: show column labels; note: using !showHeatMapColum...

文章 植物单细胞分析方法

...ed set of alignments, we implemented heuristic cutoffs for genomic context and sequencing depth indicative of high-quality nuclei. Specifically, we fit a smoothed spline to the log10 transformed unique Tn5 integration sites per nucleus (response) against the ordered log10 barcode rank (decreasing ...

文章 perl自动获取网页上的信息

...o page title for url : $url\n";        }    } else { #display status information and exit         die $resp->status_line;    }} # pass params to main function,# @ARGV# The array @ARGV contains the command-line arguments intended for the script. main(@ARGV);