找到约 15 条结果

文章 qiime1 matplotlab绘图报错解决:_tkinter.TclError: no display name and no $DISPLAY environment variable

Command run was: plot_taxa_summary.py -i /share/nas1/huangls/test/ampliseq-q1/16s2/4.Qiime_analysis/taxa_summary_plot/otu_table_no_singletons_rare_sorted_L2.txt,/share/nas1/huangls/test/ampliseq-q1/16s2/4.Qiime_analysis/taxa_summary_plot/otu_table_no_singletons_rare_sorted_L3.txt,/share/nas1/huangl...

问题 MCScanX报错

Reading control file error: For input string: "800     //plot width and height (in pixels)" Exception in thread "main" java.lang.IllegalArgumentException: Width (0) and height (0) cannot be <= 0 at java.awt.image.DirectColorModel.createCompatibleWritableRaster(DirectColorModel.java:1016) at...

文章 群体遗传进化与GWAS分析动植物文献

...群体进化-2012·        文章:Whole-genome sequencing of giant pandas provides insights into demographic history and local adaptation·        基础数据:34只熊猫,4.7x覆盖深度 NC-牦牛群体进化-2015·        文章:Yak whole-genome resequencing reveals domestic...

问题 基因组比对

...有没有相关的课程呀?We analysed gene families shared between ash and 10 other species (Supplementary Table 10). In total, 279,603 proteins (77.14% of the input sequences) clustered into 27,222 groups, of which 4,292 contained sequences from all species, 3,266 were angiosperm-specific and 4...

问题 plink报错

使用plink将vcf转tped格式的时候出现这个报错Error: .bim file has a split chromosome.  Use --make-bed by itself to remedy this. 添加 --make-bed后依旧没有解决

文章 你还在为基因芯片表达差异分析发愁吗?这个方法带你飞!

...理,分组信息大致如下,并基于分组信息构建分组矩阵(design): > group         TreatmentGSM49939   CONTROLGSM49940   CONTROLGSM49941   CONTROLGSM49942  INFECTEDGSM49943  INFECTEDGSM49944  INFECTED > design = model.matrix(~ Treatment + 0...

问题 plink 报错

Error: --set-missing-var-ids requires a sorted .bim file.  Retry this command after using --make-bed 之前的vcf文件运行用样的命令就不会出错呢,这难道是vcf文件位置顺序不对?

问题 GWAS分析绘制进化树遇到下面问题是什么意思,请问怎么解决?

... Zhu, Yi Guan, Tommy Tsan-Yuk Lam. ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data. Methods in Ecology and Evolution. 2017, 8(1):28-36. doi:10.1111/2041-210X.12628 LG Wang, TTY Lam, S Xu, Z Dai, L Zhou, T Feng, P Guo, ...

文章 Evolview绘制进化树时添加热图

...umber between 0 to 1opacity of the datasetmodifiers shared with Bar Charts and Dot plotsmodifiers that apply to both Bar Charts, Dot Plots and Heatmap!gridlabel or !axis or !showHeatMapColumnLabelnone, or any integer; 0 : hide column labels; >= 1: show column labels; note: using !showHeatMapColum...

文章 全外显子测序疾病相关基因变异位点过滤标准及参考文献

...点保守性过滤 SIFT, Polyphen2, LRT, Grantham scale, Mutation Taster and PhyloP 可以用ANNOVAR一站式注释dbNSFP,各种方法的算法参见文章,使用说明见ANNOVAR官网:ljb 2.基于位点的变异频率的稀有性 filtering by MAF < 5% (ESP and 1000G), nonsynonymous changes...

文章 perl自动获取网页上的信息

...o page title for url : $url\n";        }    } else { #display status information and exit         die $resp->status_line;    }} # pass params to main function,# @ARGV# The array @ARGV contains the command-line arguments intended for the script. main(@ARGV);

问题 GO注释:blast了nr数据库并通过blast2go获得了GO注释号;也通过blast了swiss-prot数据库获得了GO注释号。这两个结果需要合并吗?

...下:CDS sequences with SSR were aligned against NCBI non-redundant (nr) and SWISS-PROT protein databases (http://www.uniprot.org), using BLASTx (Altschul et al., 1997) with a cutoff E-value 1E-5. Blast results were imported into Blast2Go (Conesa et al., 2005) for GO term mapping. Mapping result...

文章 批量邮件推送python代码模板,可支持html邮件格式

...t;In the introductory post for this series we spoke a little about how web designers can benefit by using Vue. In this tutorial we’ll learn how to get Vue up..</p>            </td>            <td width="15"></td>            <td width="200" valign="top"&...

问题 ALLHIC显示找不到sample.bwa_mem.bam

...你好,在用ALLHIC1或者2的时候都报错,均有显示[E::idx_find_and_load] Could not retrieve index file for '/work/genome/assembly/output/docker/GM/30.ALLHiC2/sample.bwa_mem.bam'。但该地址下是有该文件的。 第二个问题是ALLHIC1时形成了sample.clean.counts_GATC.13g1.txt...

文章 你不知道的微生物互作分析方法

...法的选择。例如下图的组合方式:Pearson、Spearman、Mutual information、BC以及KLD。 通过该窗口选择Automatic threshold setting,设置网络阈值,选择edgeNumber 和Top and bottom,并填写上对应的数值100,可以按照实际填写。 ReBoot 进...