找到约 15 条结果

问题 seqclean出错

...log  Error log file:    err_seqcl_genome.repeat.fa.log  Using 1 CPUs for cleaning -= Rebuilding genome.repeat.fa cdb index =-  Launching actual cleaning process:  psx -p 1  -n 10000  -i genome.repeat.fa -d cleaning -C '/work/12.EVM/00.data/genome.repeat.fa:ANLMS100:/work/12.EVM/00.data/...

文章 蛋白结构预测

...最准确的自由建模方法之一。 Zhang, Y. I-TASSER server for protein 3D structure prediction. BMC Bioinformatics 9, 40 (2008). https://doi.org/10.1186/1471-2105-9-40

文章 igraph 包安装错误

...ed 1 exit status make: *** [igraph.so] Error 1 ERROR: compilation failed for package ‘igraph’ * removing ‘/share/work/biosoft/R/R-v3.4.0/lib64/R/library/igraph’ The downloaded source packages are in         ‘/tmp/Rtmply12uv/downloaded_packages’ Updating HTML index of packages...

问题 构建泛基因列表，提取最长转录本这一步，运行几个小时之后没有结果是怎么回事？

...，我在构建泛基因集列表时，做提取最长转录本这一步，for i in `cat ID.txt`;do    $script/agat_sp_keep_longest_isoform.pl --gff $datadir/${i}.gff -o gff/${i}.longest_isoform.gff3 ; done     由于我的基因组较多，113个，所以先做了这一步。运行了好几个...

文章 甲基化水平计算

... 的分母之和） 参考文献：‘Leveling’ the playing field for analyses of single-base resolution DNA methylomes

问题 Fam_genelist中基因个数超出了所有的鉴定的数据

...unigenel apple.WRKYgene.uniq.list -fam WRKY awk -F"\t" '{if($0!~/^Fam_N/){for(i=2;i<=27;i++){print $1"\t"$i}}}' PAV_gene.list |sed "s/;$//"|awk -F"\t" '{gsub(";","\n"$1"\t",$0);print}'|awk -F"\t" '{if($2!=""){print}}' > Fam_gene.list 后还是如此。请老师帮忙解答一下，谢谢

文章 遗传图谱中各种作图群体介绍

... 作图群体 作图群体（Mapping population）是指population used for mapping the genes, 用于绘制基因图谱（或用来定位基因）的群体。作图群体是进行QTL（quantitative trait locus）定位的基础。 作图群体有很多类型，今天给大家介绍最常用的几...

文章 dcaps标记设计软件——SNP_Primer_Pipeline

...c    0.291627        6.81    4.00    R2Sites that can differ all for SNPCAPS cut information for snp SNPEnzyme  Enzyme_seq      Change_pos      Other_cut_posCac8I,710       gcnngc  295BseYI,660       cccagc  298     427HhaI,HinP1I,29  gcgc    297     412PsiI,560    ...

问题 《微生物宏基因组分析实操》课程，配制分析环境（doc.sh）遇到Bug

...启动docker pull进行镜像下载，但是4个小时后仍然报错“Error: writing blob: storing blob to file "/var/tmp/storage1966479595/2": happened during read: unexpected EOF[us078@omicsclass  01:28:19 ~/metagenomics]$2024-03-06T00:45:52.727092Z [rsession-us078] ERROR system error 2 (No suc...

问题 《微生物宏基因组分析实操》课程，配制分析环境（doc.sh）遇到Bug

...启动docker pull进行镜像下载，但是4个小时后仍然报错“Error: writing blob: storing blob to file "/var/tmp/storage1966479595/2": happened during read: unexpected EOF[us078@omicsclass  01:28:19 ~/metagenomics]$2024-03-06T00:45:52.727092Z [rsession-us078] ERROR system error 2 (No...

文章 论文“挑错”哪家强?中国学者64字diss柳叶刀论文，过于霸气!

...s remifentanil patient-controlled analgesia versus intramuscular pethidine for pain relief in labour (RESPITE): an open-label, multicentre, randomised controlled trial” 文章内容就不细说了， 最后这篇论文的作者Matthew Wilson等人的结论是：“与肌内注射哌替啶相...

文章 tassel 软件做GWAS关联分析多年多点表型数据整理格式

...asseladmin/tassel-5-source/wiki/UserManual/Load/Load#markdown-header-trait-format Trait Format This format does not require users to provide information on number of rows and columns. The file starts with the key word <Trait> followed by names of columns. The column for line should not be la...

问题 GO注释：blast了nr数据库并通过blast2go获得了GO注释号；也通过blast了swiss-prot数据库获得了GO注释号。这两个结果需要合并吗？

...alue 1E-5. Blast results were imported into Blast2Go (Conesa et al., 2005) for GO term mapping. Mapping results were submitted to WEGO (Ye et al., 2006) for GO classification. 他的结果如下： 814 and 745 CDSs with SSR in genomes of C. exilicauda and M. martensii, respectively, were subjec...

文章 ggplot2主题theme参数

... legend.box.background,  legend.box.spacing, panel.background, panel.border, panel.spacing,  panel.spacing.x, panel.spacing.y, panel.grid, panel.grid.major,  panel.grid.minor, panel.grid.major.x, panel.grid.major.y, panel.grid.minor.x,  panel.grid.minor.y, panel.ontop, plot.backg...

问题 共线性分析画圈图的时候出现报错Width (0) and height (0) cannot be

Reading control file error: For input string: "1000    //plot width and height (in pixels)"Exception in thread "main" java.lang.IllegalArgumentException: Width (0) and height (0) cannot be <= 0    at java.desktop/java.awt.image.DirectColorModel.createCompatibleWritableRaster(DirectColorMode...