...gt;
NOTICE: Finished reading 5099177 lines from VCF file
NOTICE: A total of 5099109 locus in VCF file passed QC threshold, representing 5099109 SNPs (3715827 transitions and 1383282 transversions) and 0 indels/substitutions
NOTICE: Finished writing allele frequencies based on 2365986576 SNP genot...
...ease index all input files:
samtools index SRR3274663.new.sorted.bam
Set the system property GATK_STACKTRACE_ON_USER_EXCEPTION (--java-options '-DGATK_STACKTRACE_ON_USER_EXCEPTION=true') to print the stack trace.
这是我的命令：gatk --java-options "-Xmx20g -Djava.io.tmpdir=./tmp" HaplotypeC...
...，望你解答。谢谢！
报错和blast文件如下：
Cannot parse the #PROGRAM field in the BLAST results file ./YC_bacteria_cgview/blast.txt at ./scripts/cgview_xml_builder/cgview_xml_builder.pl line 4716, <INFILE> line 0.000000.
#PROGRAMquery_id match_id match_descripti...
...eating paired FASTQ. -tags Create FASTQ based on the mate info in the BAM R2 and Q2 tags.Tips: If you want to create a single, interleaved FASTQ file for paired-end data, you can just write...
...################################## input data##########################
# The following setting is important, do not omit.
options(stringsAsFactors = FALSE)
#读取数据，删除第一列GeneSymbol
datExpr = read.table(expr_file,header=T,row.names=1,comment.char = "",check.names=F)
datExpr = d...
...$(grep -c ">" ${lib}noProtFinal)"done
会报错如下：
Can not open the seqfile ModelerAll.lib_blast_results.txt.fnolowm50seqmergeunmatchedregion.pl seqfileIllegal division by zero at /public-supool/home/thli/scripts/genome_annotation/ProtExcluder1.2/GCcontent.pl line 122.Can not open the seq...
... input clinical information file path[required]
--mclust whether to cluster the samples[optional,default:False]
-g group, --group group
Group the samples into several
categories[optional,default:3]
-n model_name, --model_name model_n...
...s) <- names(termsNames) ## return NAs for the terms that are not found in the DB and make sure the 'names' attribute is as specified shortNames <- shortNames[whichTerms] names(shortNames) <- whichTerms r...
docker 容器自动退出，再连就报错：Cannot connect to the Docker daemon at unix:///var/run/docker.sock. Is the docker daemon running?
我检查docker运行状态显示正在运行：
docker.service - Docker Application Container Engine
Loaded: loaded (/lib/systemd/system/docker.servic...
docker 容器自动退出，再连就报错：Cannot connect to the Docker daemon at unix:///var/run/docker.sock. Is the docker daemon running?
我检查docker运行状态显示正在运行：
docker.service - Docker Application Container Engine
Loaded: loaded (/lib/systemd/system/docker.servic...
...白质互作网络，六月底进行了一次，hide disconnected nodes in the network后有40个节点，隐藏了20个节点；八月低在string进行了同样的操作，hide disconnected nodes in the network后有63个节点，节点数没有减少；这两次使用的是同一个蛋白序列fa...