...lem persists, you may consider sending the file
to 'sra@ncbi.nlm.nih.gov' for assistance.
=============================================================
...l, default: 1]
-X x.lab, --x.lab x.lab
the label for x axis [optional, default: log2FC]
-Y y.lab, --y.lab y.lab
the label for y axis [optional, default: -log10(FDR)]
-T title, --title title
the label for main title [option...
...2.7-linux-x86_64.egg/skbio/diversity/alpha/_ace.py", line 70, in ace
raise ValueError("The only rare OTUs are singletons, so the ACE "
ValueError: The only rare OTUs are singletons, so the ACE metric is undefined. EstimateS suggests using bias-corrected Chao1 instead.
这是因为ace指数通...
...savirus in monkey rectal swab and throat swab specimens in China: Proposal for Posaliviridae as a new family in Picornavirales》；
Han Z, Song Y, Xiao J, Zhao X, Lu H, Zhang K, Jia S, Zhou J, Li J, Si F, Sun Q, Zhu S, Wang D, Yan D, Xu W, Fu X, Zhang Y. Monsavirus in monkey rectal swab and throat...
...A 1>
把文件的名字（前缀）赋给每个读取到的数据
> for (i in 1:length(ABC)){+ assign(make.names(gsub(".txt","",tem[i])),data.frame(ABC[[i]]))+ }> A V1 V21 A 1> B V1 V21 B 2> C V1 V21 C 3
运行core_pan_gene_compare.r ，报错Error in contrasts<-(*tmp*, value = contr.funs[1 + isOF[nn]]) :
contrasts can be applied only to factors with 2 or more levels
Calls: aov ... model.matrix.terms -> model.matrix.default -> contrasts<-
Execution halted。我在泛基因组分类的...
[root@30b37d57431e 00:02:31 /work/3.map/dadi]# gtfToGenePred -genePredExt /work/ref/Bamboo.Hic.gtf unknown_refGene.txt
conflicting frame for PH02Gene38416.t1 exon index 0, was 0, trying to assign 2
...able），或在硬件上增加内存。
Error: package ‘XYZ’ 1.2.3 is required by ‘somePackage’ but will not be installed
R的生态系统包含大量的扩展包，这些包彼此之间可能有依赖关系。有时，一个包需要的依赖包版本与另一个包需要的版本不...
...with this analysis:Some pairwise distances could not be estimated.For example,between sequences 23 and 11.
这是因为你的序列差异太大，无法构建进化树，应当将序列差异较大的gap给删除掉，再进行进化树分析，如下图所示：
当然手动删除...