...fault: false)
-siteFile <Statistics File> : The name of the file to which these results will be saved.
-alleleFile <Genotype Effect File> : The name of the file to which these results will be saved.
-maxP <max P value> : Only results with p <= maxPvalue will be reported. Defa...
...：WARN Strand BiasBySample - Annotation will not be calculated,genotype is not called or alleleLikelihoodMap is null 属于正常现象么？而且，运行这样一个样本数据真菌的，参考基因组为32.2Mb大概需要运行多久呢？
..., date, Group
dbl (4): #SampleID, MouseNR, Plate, DES
ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
Error in `select()`:
! Can't subset columns with `metaData[, 1, drop = T]`.
✖ Can't c...
...t by increasing the k.anchor parameter, whichis set to 5 by default. Increasing this parameter to 20 will assist in aligning these populations [default 5] -b batch.id, --batch.id batch.id ...
...in: AJCC Cancer Staging Manual, 8th Edition, 2017)AJCC/TNM staging is used for predicting outcomes of thymic tumors, such as recurrence (in the lower stages) and disease specific survival (in the higher stages); reference numbers are available (J Thorac Oncol 2014;9:S65)Pre operative clinical stagin...
... performed by MITE Hunter (11-2011)64, and the latter was performed by LTR_retriever (v2.8.7)65, which integrates LTRs predicted from LTRharvest66 and LTR_Finder (v1.0.7)67. Other known repeat sequences were annotated by searching RepBase (v20170127) (http://www.girinst.org/server/RepBase/index.php...
...ment |
#nodes.dmp file consists of taxonomy nodes. The description for each node includes the following
#fields:
# tax_id -- node id in GenBank taxonomy database
# parent tax_id -- parent node id in GenBank taxonomy dat...
...ore authorative and comprehensive reference is http://gridscheduler.sourceforge.net/htmlman/htmlman1/qstat.html and http://gridscheduler.sourceforge.net/htmlman/htmlman1/qconf.htmlA simpler configuration tutorial is given at http://ait.web.psi.ch/services/linux/hpc/merlin3/sge/admin/sge_queues.h...
PuTTY X11 proxy: unable to connect to forwarded X server: Network error: Connection refused
: cannot connect to X server localhost:10.0
解决办法 配置Xming: https://www.linuxprobe.com/putty-xming-oracle.html
首先安装Xming ：https://sourceforge.net/projects/xming/files/Xming/6.9...
... chromosome code 'chr27' on line 30616892 of .vcf file.(Thisis disallowed for humans. Check if the problem is with your data, or ifyou forgot to define a different chromosome set with e.g. --chr-set.)
使用的命令如下：
plink --vcf $workdir/2022_clean.vcf.gz --pca 10 --out plink_pca ...