...d, specify either useNames = TRUE or useNames = FALSE. seems to be coming from a change in matrixStats 1.2 that released a couple of days ago. Can you downgrade to1.1 and try?remotes::install_version("matrixStats", version="1.1.0") # restart your session and run previous scripts
...ads 2 --p-trim-left-f 29 --p-trim-left-r 18
提示：
Plugin error from dada2:
An error was encountered while running DADA2 in R (return code 1), please inspect stdout and stderr to learn more.
Debug info has been saved to /tmp/qiime2-q2cli-err-u8wvbzh9.log
打开日志文件：
Erro...
...}.bowtie.map.log # Filter and output as SAM(or BAM),-f 4 to Remove reads from the alignment, # if you want to keep the -F on the alignment (12 for both ends), add -b before the output to output in BAM format samtools view --threads 6 \ -f 12 -h \ $workdir/1.host_del_and_qc/cleandata/${i}.bowtie....