HECIL(Hybrid Error Correction of Long Reads using Iterative Learning): 这是一款基于二代数据比对，采用迭代学习的方法对pacbio 等长读长序列进行纠错的软件。该软件的第一作者居然是来自IBM。
1. 软件的安装
安装比较简单，从github 上下载...
...--verbose --help --log-bin-index=/tmp/tmp.ogWM7TzzGmmysqld: Can't read dir of '/etc/mysql/conf.d/' (Errcode: 2 - No such file or directory)mysqld: [ERROR] Fatal error in defaults handling. Program aborted!
由于是mysql5.7更新导致的，解决方法有三个，
1.取消-v参数：
...
...ml/tree.h:1124:3: note: expected ‘xmlBufferPtr’ but argument is of type ‘xmlBufPtr’ xmlBufferWriteQuotedString(xmlBufferPtr buf, ^xsltutils.c: In function ‘xsltSaveResultToString’:xsltutils.c:1758:26: error: dereferencing pointer to incomplete type *doc_tx...
...文件即可，文件格式如下：
LABELS#use this template to change the leaf labels, or define/change the internal node names (displayed in mouseover popups)#lines starting with a hash are comments and ignored during parsing#=================================================================## ...
...everse_complement_IUPAC { my $dna = shift; # reverse the DNA sequence my $revcomp = reverse($dna); # complement the reversed DNA sequence $revcomp =~ tr/ABCDGHMNRSTUVWXYabcdghmnrstuvwxy/TVGHCDKNYSAABWXRtvghcdknysaabwxr/; return $revco...
...cker -l
报错：Error starting daemon: SELinux is not supported with the overlay2 graph driver on this kernel. Either boot into a newer kernel or disable selinux in docker (--selinux-enabled=false)
解决方案：
意思是说：此linux的内核中的SELinux不支持 overlay2 graph driv...