...。E值接近零或为零时，具本上就是完全匹配了
E-value - this tells you the probability of getting this score and homology by chance (from random sequence), that is, the lower (the higher the number behind e-), the more reliable the result is. As I have mentioned above, it's not only...
... set event column name must 0 or 1 code format [required] -v variate [variate ...], --variate variate [variate ...] variate for cox analysis [required] -P predict.time [predict.time ...], --p...
...: You may be importing Biopython from inside the source tree. Thisis bad practice and might lead to downstream issues. In particular, you might encounter ImportErrors due to missing compiled C extensions. We recommend that you try running your code from out...
...d C.baccatum
The genomes of C. annuum, C.chinenese and C.baccatum were retrieved from PGP (http://peppergenome.snu.ac.kr/download.php).The C. annuum genome was compared
to C.chinenese and C.baccatum
genomes using the MCScan toolkit (V1.1)[1].
To call synteny blocks, we performed all-against-al...
...ne with 1609 transcripts (including 43 without coding sequence annotation) for 1609 unique genesNOTICE: Processing next batch with 6421 unique variants in 6421 input linesNOTICE: Reading FASTA sequences from HPdb/HP_refGeneMrna.fa ... Done with 220 sequences
但是使用table_annovar.pl进行注释...
...
/home/manager/gene_family/circos/genome.txt
but the maximum is currently set at [25000]. To increase this number change
max_links in etc/housekeeping.conf. Keep in mind that drawing that many links
may create an image that is too busy and uninterpretable.
请问出现如...
For SNPs, we set the thresholds as −log10(P value) = 6, 6, and 4 for litter size, numbers of horns and nipples, respectively.
请问，这种自选的阈值，怎么选择呢？为什么有的是6有的是4呢？
...ulate ungapped Karlin-Altschul parameters due to an invalid query sequence or its translation. Please verify the query sequence(s) and/or filtering options
已去除序列中的终止子符号。
e.g：
>ENST00000620518 ENSG00000081692 JMJD4 1:227732392-227735273(-)
MDRETRALADSHFRGLGVDVPGV...
...############ input data##########################
# The following setting is important, do not omit.
options(stringsAsFactors = FALSE)
#读取数据，删除第一列GeneSymbol
datExpr = read.table(expr_file,header=T,row.names=1,comment.char = "",check.names=F)
datExpr = datExpr[,-1]
# Take a ...
... build a FASTA file from an AGP file agpcheck check for valid AGP file format asmstats assembly statistics splitasm split an assembly at gaps delta2paf delta to PAF file conversion paf2delta PAF to delta ...
...位置(chromEnd)、名称(name)、染色标识(gieStain)‘1000g2015aug’ for alternative allele frequency in the 1000 Genomes Project 。1000基因组项目（和ExAV 外显子集合联合一样，是公开、开放的数据库）里面供选择的等位基因频率信息。‘exac03’for the var...