...vironment value of R_HOME
--> Q&A for bioinformatics, please visit the website: https://www.omicsclass.com/
--> R beginners ? I suggest your learning R language: https://study.omicsclass.com/index
Error in library(geneHapR) : there is no package called ‘geneHapR’
Execution halt...
... [end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error
× Getting requirements to build editable did not run successfully.
│ exit code: 1
╰─> See above for output.
note: This error origina...
...过来找我，拿了一叠纸， “This is the draft. Please let me know what you think. We can aim for a Science report.”（这是初稿，你看看如何，我们可以试试《科学》）我仔细一看，天啊！一共7页，四个多小时Jeremy已经把文章的整体写完了，只是...
...vironment value of R_HOME
--> Q&A for bioinformatics, please visit the website: https://www.omicsclass.com/
--> R beginners ? I suggest your learning R language: https://study.omicsclass.com/index
Failed to create bus connection: No such file or directory
Error: package ‘Annotati...
...tput biom file', required=True)
args = parser.parse_args()
# Load the BIOM table
table = load_table(args.input)
# Get the OTU IDs andthe data
otu_ids = table.ids(axis='observation')
data = table.matrix_data
# Get the taxonomy metadata
metadata = table.metadata(axi...
...dial tcp 108.160.172.1:443: connectex: A connection attempt failed because the connected party did not properly respond after a period of time, or established connection failed because connected host has failed to respond.
...Pos:40436InsertionPos:0Name:SHIC_SCAFFOLD_11_40436Variants:G/AMAF:NaNRef:G and PositionChr:HIC_SCAFFOLD_9Pos:117578893InsertionPos:0Name:SHIC_SCAFFOLD_9_117578893Variants:G/AMAF:NaNRef:G out of order.
....per.chunk=6, method='client')
Downloading data for project TCGA-COAD
Ofthe 521 files for download 521 already exist.
All samples have been already downloaded
> # 保存结果
> data <- GDCprepare(query = query,
+ save = TRUE,
+ ...
...eference=1000GenomesPilot-NCBI36##phasing=partial##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data">##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">##INFO=<ID=AF,Number=.,Type=Float,Description="Allele Frequency">##INFO=<ID=AA,Number=1,Ty...
...查询?shape
获得以下内容：
# Shape examples
# Shape takes four types of values: an integer in [0, 25],
# a single character-- which uses that character as the plotting symbol,
# a . to draw the smallest rectangle that is visible (i.e., about one pixel)
# an NA to draw nothing
p + geom_poin...
...SFS: Effective selection of population size projection for construction ofthe site frequency spectrum. Convert VCF to dadi/fastsimcoal style SFS for demographic analysis
2. 位点频谱(SFS)计算 - 简书 (jianshu.com)
...ang Y, Ma W, Xing B. Glioblastoma cell differentiation trajectory predicts the immunotherapy response and overall survival of patients. Aging (Albany NY). 2020 Sep 21;12(18):18297-18321. doi: 10.18632/aging.103695. Epub ahead of print. PMID: 32957084; PMCID: PMC7585071.延伸阅读GEO数据库挖掘...