找到约 15 条结果

文章 ggforestplot error: Error in assertAndRetrieveTidyValue(x, mean) : argument "x" is missing, with no default

...ration" ) #> Error in assertAndRetrieveTidyValue(x, mean): argument "x" is missing, with no default 解决办法是取消加载forestplot包,清洁环境并重新运行代码

文章 BSA分析中QTL-seq 分析:95% 99%阈值置信区间是如何计算的

...#################################################################caluclate of genotype ratio#########################individuals_genotype<-function(number_of_total_individuals){ ratio_of_genotype<-c()for(i in 1:number_of_total_individuals){ratio_of_genotype<-c(ratio_of_genotype,genotype()) ...

文章 cactus-bin-v2.9.9 安装笔记

...to pass in the patched config file with `--configFile` (download the patch from the [releases](https://github.com/ComparativeGenomicsToolkit/cactus/releases) page).## SetupTo build a python virtualenv and activate, do the following steps. This requires Python version >= 3.9 (so Ubuntu 18.04 users...

文章 R语言对基因表达量数据RNA-seq做PCA分析

...最大的基因,R筛选基因: myfpkm<-read.table("All_gene_fpkm.xls",header=TRUE,comment.char="",sep = "\t",check.names=FALSE,row.names=1)probesetvar = apply(myfpkm, 1, var) #表达变化大的基因ord = order(probesetvar, decreasing=TRUE)[1:200] #前200个基因,或者更多pca = p...

文章 轻松搞定iTOL注释文件

...bars                Create bar charts, not gradients, from numbers with decimal points ('double') [default: FALSE]        -D DIR, --directory=DIR                Place output files in this directory ('.' means working directory, empty m...

文章 ssgsea_enrich_diff.r GSVA富集分析

...n values are integer counts, such as those derived from RNA-seq experiments, then this argument should be set to kcdf="Poisson"[default Gaussian] --group1 GROUP1 Designate the first group[optional,default C1] --group2 ...

文章 DNBelab C4单细胞RNA-Seq文库制备

...the mRNAs released by small-size magnetic beads. Small-size magnetic beads integrate the data from multi large-size magnetic beads of the same droplet. Combined application of small- and large-size magnetic beads optimises experimental system and improves cell capture efficiency. The cell or nuclei ...

问题 wrong orderBy parameter; set to default `orderBy = "x"`

dotplot(kegg,        showCategory = 10,        font.size = 12,        x = "GeneRatio",        title="Enrichment KEGG_dot") 运行这个代码,会出现报错:wrong orderBy parameter; set to default `orderBy = "x"`,

文章 B/T细胞分类:

...g, H., Wang, D., & Zhang, Z. (2023). A pan-cancer single-cell panorama of human natural killer cells. Cell, 186(19), 4235–4251.e20. https://doi.org/10.1016/j.cell.2023.07.034 (北京大学张泽民团队揭示泛癌种自然杀伤细胞异质性) Cheng, S., Li, Z., Gao, R., Xing, B.,...

文章 openssl 安装

...d/3.0/index.htmlhttps://www.howtoforge.com/tutorial/how-to-install-openssl-from-source-on-linux/https://oraclelinux.pkgs.org/9/ol9-appstream-x86_64/openssl-devel-3.0.7-6.0.1.el9_2.x86_64.rpm.html 

文章 seurat_sc_cluster.r 脚本使用帮助:

...r, --data.dir data.dir                        input read count from 10X cellranger                        filtered.feature.bc.matrix.dir [optional]  --gene.column gene.column                        Specify which column of genes.tsv or features.tsv to        ...

文章 numpy从文件直接读入得到数组对象

...测试数据:https://archive.ics.uci.edu/ml/machine-learning-databases/iris/ import numpy as npimport osos.chdir("D://python_script//")a = np.loadtxt("iris.data", dtype = float64, delimiter=',', usecols = [0, 1, 2, 3])print(a)b = np.loadtxt("iris.data", dtype = "S", delimiter=',', usecols = [...

问题 非模式物种KEGG富集分析报错 X is null so the result will be null

文件路径都检查没有问题,但是运行代码后,出现如下报错

问题 非模式物种KEGG富集分析报错 X is null so the result will be null

文件路径都检查没有问题,但是运行代码后,出现如上报错

文章 TCGA临床数据各列含义

...kind The resource type. aliquots[] List of barcodes of aliquots taken from this participant. clinical_data The clinical data about the participant. ParticipantBarcode Participant barcode. Project Project name, .eg. “TCGA”. Study Tumor type abbreviation, e.g. “BRCA”. age_at_...