文章 python操作大文件删除某行

...入你需要删除的行数，例如这里是第六行del_numb=6with open('file.txt', 'r') as old_file:with open('file.txt', 'r+') as new_file: current_line = 0# 定位到需要删除的行while current_line < (del_numb-1): old_file.readline() current_line += 1# 当...

用户 L.earn to live

话题 geneid_to_mRNAid

话题 mRNA_to_geneid

文章 eggNOG 注注释报near "WITHOUT": syntax error

File "/home/cxs3_z4/software/eggnog-mapper-2.1.0-1/eggnogmapper/annotation/db_sqlite.py", line 39, in initcurs.execute("PRAGMA synchronous=OFF;")sqlite3.DatabaseError: malformed database schema (prots) - near "WITHOUT": syntax error""" 解决办法，是centos7 系统中的sqlite 版本太...

问题 DANPOS3分析MNase-seq数据

...组数据，出现下面的报错 ValueError: math domain error R[write to console]: Warning messages: R[write to console]: 1: R[write to console]: In ppois(q, avg, lower.tail = FALSE, log = TRUE) : R[write to console]:  NaNs produced R[write to console]: 2: R[write to console]: In ppois...

问题 用GSDS构建启动子元件图出现Error: BED file parsing error. Error: GFF file parsing error. Error: 35

问题 Error running system command:

...5.var_ann/snp.avinput> NOTICE: Finished reading 5099177 lines from VCF file NOTICE: A total of 5099109 locus in VCF file passed QC threshold, representing 5099109 SNPs (3715827 transitions and 1383282 transversions) and 0 indels/substitutions NOTICE: Finished writing allele frequencies based o...

文章 docker 报错 error during connect: In the default daemon configuration on Windows,

...;term=omicsclass": open //./pipe/docker_engine: The system cannot find the file specified. 是因为docker没有打开，打开一下就行：

文章 linux的简单命令（二）

... wget +链接 3：cat命令 一次性显示整个文件的内容 cat+file.name+|+tac#表示事先在文件file.name中上下翻转cat+file.name+|+rev#左右反转，每一行的字符都镜像显示 4：查看文件 head和tail #head表示查看文件从前往后#tail表示查看文件从后...

文章 GenomicsDBImport 的多样本变异检测

...表，每行格式为“gvcf文件名路径”，具体格式参考GATKmap_file=all.map# 每个batch的并行线程reader_threads=1#同时读入的最大intervals数量,值越高，速度越快，但消耗更多的内存，且需要有权限创建足够多的文件.num=26#缓存文件tmp=tmpdir2#第...

问题 geneid_to_mRNAid.pl

输入文件： 报错：

文章 linux:简单使用（2）

... wget +链接 3：cat命令 一次性显示整个文件的内容 cat+file.name+|+tac#表示事先在文件file.name中上下翻转cat+file.name+|+rev#左右反转，每一行的字符都镜像显示 4：查看文件 head和tail #head表示查看文件从前往后#tail表示查看文件从后...

文章 TCGA临床数据各列含义

... Age at which a condition or disease was first diagnosed in years. anatomic_neoplasm_subdivision Text term to describe the spatial location, subdivisions and/or anatomic site name of a tumor. batch_number Groups samples by the batch they were processed in. bcr Biospecimen core resourc...

问题 动植物泛基因组分析实操课程资料问题

...erl/perl-5.22.1/lib/site_perl/5.22.1/auto/share/dist/AGAT/agat_config.yaml file The test to apply is Wrong: !. We want something among this list: <,>,<=,>=,! or =.[），最终导致运行结果是空的