This is your first time to run parameter calculations on soil20231205 at 0.890 threshold. It will take a few minutes...R project wrong! Please report web administrator.setwd("D:/wwwroot/MENA/datasets/196868ld/1701851366")library(sna)cor.data<-read.table("soil20231205 Pearson Correlation_0.890 4 R...
...滤SNP时有错误，查看输出日志发现After filtering, kept 200 out of 200 Individuals
Outputting VCF file...
After filtering, kept 0 out of a possible 26630017 Sites
No data left for analysis!
Run Time = 433.00 seconds。就没有了 。请问老师为啥会显示没有数据可控分析...
...= reported length 7193437
2: In rbind(names(probs), probs_f) :
number of columns of result is not a multiple of vector length (arg 2)
对于报错内容，不是看的很明白，大神讲解下。主要想知道这样对后续的分析有什么影响。
下载的平台是
GPL6244[HuGene-1...
...out o -remove -protocol refGene -operation gx -nastring . -csvoutNOTICE: the --polish argument is set ON automatically (use --nopolish to change this behavior)-----------------------------------------------------------------NOTICE: Processing operation=gx protocol=refGeneWARNING: the 'g' rather th...
...e-05
# MAX GAPS: 25
############### Statistics ###############
# Number of collinear genes: 0, Percentage: 0.00
# Number of all genes: 55
##########################################
ST_AT.collinearity (END)
...eles 2 |gzip - > all.clean.vcf.gz
结果是After filtering, kept 0 out of a possible 118111 Sites（中间很多Warning），于是把参数全部拆开一次只过滤一个参数，发现除了--min-alleles 2 --max-alleles 2，可以过滤成功：kept 106816 out of a possible 118111 Sites之...
...son (Fasta), GDE, Clustal, GCG/MSF, RSF.Enter the name ofthe sequence file :我输入了我的fasta格式的序列文件名,回车,出现:Sequence format is Pearson********************************************************************** CLUSTAL 2.1 Multiple Sequence Align...
...藏因子，则与样本的数量有关，可以参考如下的标准：
The number of PEER factors was selected as function of sample size (N):
15 factors for N < 15030 factors for 150 ≤ N < 25045 factors for 250 ≤ N < 35060 factors for N ≥ 350
根据文章的提示，使用的是...
BIN-INSTALL.md
# Installation ofthe Cactus binary distributionThis describes the steps require to install the Cactuspre-compile binary, static linked distribution.## ExtractingIf you have not already extract the distribution and cd into the cactus directory:```tar -xzf cactus-bin-v2.9.9.tar.gzcd...
... --recode
--stdout
After filtering, kept 320 out of 320 Individuals
Outputting VCF file...
After filtering, kept 0 out of a possible 40089272 Sites
No data left for analysis!
Run Time = 2539.00 seconds
求助一下