文章 pheatmap返回的结果解释（获得新的排序信息）

...e Invisibly a pheatmap object that is a list with components tree_row the clustering of rows as hclust objecttree_col the clustering of columns as hclust objectkmeans the kmeans clustering of rows if parameter kmeans_k was specifiedgtable a gtable object containing the heatmap, can b...

问题 同学，你这个问题解决了吗

...soft/MCScanX/MCScanX/MCScanX ST_AT 得到以下结果 Reading BLAST file and pre-processingGenerating BLAST list170 matches imported (1 discarded)44 pairwise comparisons0 alignments generatedPairwise collinear blocks written to ST_AT.collinearity [0.013 seconds elapsed]Writing multiple syntenic bl...

问题 Ran out of memory; automatically trying more memory-economical parameters.转录组建索引一直弹出这句话

问题 老师，想请问一下WGCNA中绘制性状与模块相关性图出现colorMatrix[, c] : incorrect number of dimensions

前面的代码都没有问题，运行绘制的代码的时候出现错误： 我检查了数据的格式和维度，数据的情况如下： 性状数据的具体内容如下： textMatrix矩阵内容如下： 实在是不知道问题出在了哪里。。。

问题 Raw-mode is unavailable courtesy of Hyper-V. (VERR_SUPDRV_NO_RAW_MODE_HYPER_V_ROOT).

...导致VirtualBox 虚拟机无法启动 Raw-mode is unavailable courtesy of Hyper-V. (VERR_SUPDRV_NO_RAW_MODE_HYPER_V_ROOT). 返回 代码:E_FAIL (0x80004005)组件:ConsoleWrap界面:IConsole {872da645-4a9b-1727-bee2-5585105b9eed}

文章 RIP实验技术

...tochondrial iron chelation ameliorates cigarette smoke-induced bronchitis and emphysema in mice. Nat Med 22(2):163-174(2016).         3.Identification and dynamic changes of RNAs isolated from RALY-containing ribonucleoprotein complexes. Nucleic Acids Res(2017).

文章 MFP - Molecular Functional Portrait

...e ore more metrics.best_threshold = '0.51'#best_threshold = 0.51def detect_type(ser, scores):    #cmeans = pd.DataFrame({cg: scores.loc[samps.index].mean() for cg, samps in ser.groupby(ser)})    cmeans = pd.DataFrame({cg: scores.loc[samps.index].mean() for cg, samps in ser.groupby("group")})  ...

文章 生命大数据

... Yuankun Zhu   Bioinformatics Engineer Supervisor   The Children's Hospital Of Philadelphia   7 Changqing Zeng   Professor   Chinese Academy of Sciences   8 陈钢   CEO   微基因   9 ...

文章 微生物多样性16S计算物种累计曲线

...ethod = "random") png(file="spe.png",h=2000,w=2000,res=300) plot(all, ci.type = "poly", col = "blue", lwd = 2, ci.lty = 0, ci.col = "lightblue", main = "Species Accumulation Curves", xlab = "Number of samples", ylab = "Number of species") boxplot(all, col = "yellow", add = TRUE, pch = "+"...

问题 Rstudio server 报错可能原因，重启 服务器之后

2024-10-16T04:36:29.877113Z [rserver] ERROR Unable to determine real path of R script /share/biosoft/R/latest/bin/R (system error 13 (Permission denied)); LOGGED FROM: bool rstudio::core::r_util::{anonymous}::validateRScriptPath(const string&, std::string*) src/cpp/core/r_util/REnvironmentPosix....

文章 基因家族分析后续试验怎么做？

...含33 TCP家族成员；class II（CIN and CYC/TB1）包含：12个CYC/TB1-type ； 21个CIN-type。 其中比较特殊的TB1在染色体4和染色体5上分别有一个拷贝，并且每个都有3个同源基因（位于A、B、D亚组）；其中染色体4上的TB1已有报道与花序发育有...

问题 ANNOVAR变异注释报错：Erro: invalid record found in exonic_variant_function file (exonic format error)

...l refGene -operation g -nastring . -vcfinput 报错所有信息：NOTICE: the --polish argument is set ON automatically (use --nopolish to change this behavior) NOTICE: Running with system command <convert2annovar.pl  -includeinfo -allsample -withfreq -format vcf4 /work/bdorsalis/4.snp_indel...

问题 omicsclass/pan-genome:v1.1镜像OrthoFinder.py报错

运行动植物泛基因组教程02.gene_family.sh命令如下：orthofinder.py -f pep \ -S diamond \ -M msa \ -A muscle \ -T fasttree \ -t 10 \ -a 2 报错如下：Best outgroup(s) for species tree---------------------------------2024-11-15 10:50:56 : Starting STRIDEERROR: Species tree inf...

用户 what a big fish

问题 请问各位老师，WGCNA分析中没有性状数据，但分析了两份基因表达数据，我想要得到Module-module relationships的图，应该怎样修改这部分打的代码呢？

...ait relationships.pdf",width=10,height=6) # Will display correlations and their p-values textMatrix = paste(signif(moduleTraitCor, 2), "\n(",                    signif(moduleTraitPvalue, 1), ")", sep = "") dim(textMatrix) = dim(moduleTraitCor) par(mar = c(6, 8.5, 3, 3)) # Display...