.../TUNA Team, Tsinghua Universityhttps://mirrors.ustc.edu.cn/CRAN/University of Science and Technology of Chinahttp://mirrors.ustc.edu.cn/CRAN/University of Science and Technology of Chinahttps://mirror.lzu.edu.cn/CRAN/Lanzhou University Open Source Societyhttp://mirror.lzu.edu.cn/CRAN/Lanzhou Univers...
...vironment value of R_HOME
--> Q&A for bioinformatics, please visit the website: https://www.omicsclass.com/
--> R beginners ? I suggest your learning R language: https://study.omicsclass.com/index
Error in library(geneHapR) : there is no package called ‘geneHapR’
Execution halt...
...] [optional, default: 1]
-X x.lab, --x.lab x.lab
the label for x axis [optional, default: log2FC]
-Y y.lab, --y.lab y.lab
the label for y axis [optional, default: -log10(FDR)]
-T title, --title title
the label for main tit...
...er.chunk files.per.chunk This will make the API method only download n (files.per.chunk) files at a time. This may reduce the download problems when the data size is too large ...
...vironment value of R_HOME
--> Q&A for bioinformatics, please visit the website: https://www.omicsclass.com/
--> R beginners ? I suggest your learning R language: https://study.omicsclass.com/index
Failed to create bus connection: No such file or directory
Error: package ‘Annotati...
...dial tcp 108.160.172.1:443: connectex: A connection attempt failed because the connected party did not properly respond after a period of time, or established connection failed because connected host has failed to respond.
...：
All installation instructions are in more detail here.
First, clone the repository and enter the directory:
git clone https://github.com/picrust/picrust2.git
cd
Next, install the required dependencies listed here.
Install PICRUSt2 into it's own environment using conda:
conda env create...
....per.chunk=6, method='client')
Downloading data for project TCGA-COAD
Ofthe 521 files for download 521 already exist.
All samples have been already downloaded
> # 保存结果
> data <- GDCprepare(query = query,
+ save = TRUE,
+ ...