...0-1][optional,default:1]
-X x.lab, --x.lab x.lab
the label for x axis[optional,default:log2FC]
-Y y.lab, --y.lab y.lab
the label for y axis[optional,default:-log10(FDR)]
-T title, --title title
the label for main title[opt...
...8 Find all occurrences of a motif in a genome. Make a 'POS' file listing these occurrences, and also a BED file re
9
10 SYNTAX: make_bed_around_RE_site.pl <fasta> <motif> <range>
11 fasta: A fasta file representing a genome (reference or draft assemb...
...。
Next，:: about Mercator - PlabiPD在注释网站发现一个大坑，The Mapman desktop application requires a diagram that illustrates the pathway or process to be visualized. Each diagram consists of a pathway image file (.svg) and an extra protein/gene mapping file (.xml). Notice, the diagr...
...ffold_1 position 9583478 (TileDB column 9583477) has too many genotypes in the combined VCF record : 1081 : current limit : 1024 (num_alleles, ploidy) = (46, 2). Fields, such as PL, with length equal to the number of genotypes will NOT be added for this sample for this locatio
...loading complete
2022-06-24 16:17:52 : INFO : 73,412 SNPs in total are in the provided input files
2022-06-24 16:17:52 : INFO : 0 SNPs excluded as multiallelic
2022-06-24 16:17:52 : INFO : 0 SNPs excluded as missing in all samples in a population
2022-06-24 16:17:52 : INFO : 22,496 SNPs excluded...
...
使用cBioPortal数据库可以先阅读关于该数据库的文章：
The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data.Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal.
大规模的癌症基因组计...
源代码：####按metadata中的分组整理，不同分类水平分类汇总
mkdir -p collapse_table_group
mkdir -p collapse_table_group
for g in type time;do #这里的type group 来自metadata文件 #--p-mode <up to you, there's sum, median-ceiling, and mean-ceiling>
...
...#lines starting with a hash are comments and ignored during parsing#select the separator which is used to delimit the data below (TAB,SPACE or COMMA).This separator must be used throught this file (except in the SEPARATOR line, which uses space).#SEPARATOR TABSEPARATOR SPACE#SEPARATOR COMMA#label is...
...' on line 30616892 of .vcf file.(This is disallowed for humans. Check if the problem is with your data, or ifyou forgot to define a different chromosome set with e.g. --chr-set.)
使用的命令如下：
plink --vcf $workdir/2022_clean.vcf.gz --pca 10 --out plink_pca \ --allow-extr...
...ation of C/C++/Fortran:
‘WGCNA’
Do you want to attempt to install these from sources? (Yes/no/cancel) Yes
installing the source package ‘WGCNA’
试开URL’https://cran.rstudio.com/src/contrib/WGCNA_1.69.tar.gz'
Content type 'application/x-gzip' length 1168289 bytes (1.1 MB)
=====...