...' on line 30616892 of .vcf file.(This is disallowed for humans. Check if the problem is with your data, or ifyou forgot to define a different chromosome set with e.g. --chr-set.)
使用的命令如下：
plink --vcf $workdir/2022_clean.vcf.gz --pca 10 --out plink_pca \ --allow-extr...
...#lines starting with a hash are comments and ignored during parsing#select the separator which is used to delimit the data below (TAB,SPACE or COMMA).This separator must be used throught this file (except in the SEPARATOR line, which uses space).#SEPARATOR TABSEPARATOR SPACE#SEPARATOR COMMA#label is...
...ation of C/C++/Fortran:
‘WGCNA’
Do you want to attempt to install these from sources? (Yes/no/cancel) Yes
installing the source package ‘WGCNA’
试开URL’https://cran.rstudio.com/src/contrib/WGCNA_1.69.tar.gz'
Content type 'application/x-gzip' length 1168289 bytes (1.1 MB)
=====...
...----------------------------------
10:53:02.159 INFO GenomicsDBImport - The Genome Analysis Toolkit (GATK) v4.4.0.0
10:53:02.160 INFO GenomicsDBImport - For support and documentation go to https://software.broadinstitute.org/gatk/
10:53:02.160 INFO GenomicsDBImport - Executing as root@1fea4...
...ence, 2009, 326(5951): 433-436.[3]Evanno G, Regnaut S, Goudet J. Detecting thenumber of clusters of individuals using the software STRUCTURE: a simulationstudy[J]. Molecular ecology, 2005, 14(8): 2611-2620.[4] Porras-Hurtado L, Ruiz Y, Santos C, et al. An overview of STRUCTURE:applications, paramet...
...t;##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">##FORMAT=<ID=GQ,Number=1,Type=Integer,Desc...
...vironment value of R_HOME
--> Q&A for bioinformatics, please visit the website: https://www.omicsclass.com/
--> R beginners ? I suggest your learning R language: https://study.omicsclass.com/index
pophelper v2.3.1 ready.
Error in plotQ(qlist, imgoutput = "join", returnplot = T, exp...
...Lite for help
A new version of Bioconductor is available after installing the most recent
version of R; see http://bioconductor.org/install
> biocLite(c("genefilter","ballgown","edgeR"))
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.2 (BiocInstaller 1.20.3), R 3.2.3 (2015-12-...
...
相对分子质量 (KDa)、等电点(PI)、负电荷残基（Total number of negatively charged residues）、正电荷残基（Total number of positively charged residues）、不稳定系数(Instability index)、总平均亲水性(Grand average of hydropathicity-简写GRAVY)、脂肪指数(Alipha...
A USER ERROR has occurred: Argument emit-ref-confidence has a bad value: Can only be used in single sample mode currently. Use the --sample-name argument to run on a single sample out of a multi-sample BAM file
...想要进行“保留蛋白编码基因”出现报错“=> Version ofthe Bioperl GFF parser selected by AGAT: 3
gff3 reader error level1: No ID attribute found @ for the feature: 1 ena_assembly_gap biological_region 2584646 ...