找到约 15 条结果

问题 请问request returned Internal Server Error for API route and version http://%2F%2F.%2Fpipe%2Fdocker_engine/v1.24/containers... check if the server supports the requested API version 这个问题该怎么解决

...ers/025fef2a3e783d8c473c644d58e2ffd31be5f157743e797b0649966a18031dfc/json, check if the server supports the requested API version

问题 利用perl脚本提取基因上游的1500bp（指定位置）序列时提示出现Incorrect parameters to subseq的错误

...use Math::BigFloat;use Bio::SeqIO;use Bio::Seq;$in = Bio::SeqIO -> new(-file => "$ARGV[0]",                                  -format => 'Fasta');$out = Bio::SeqIO -> new(-file => ">$ARGV[2]",                                  -format => 'Fasta');...

问题 单细胞测序使用subset脚本提出子集，再进行拟时分析报错plot_genes_by_group

Error in plot genes by group(cds, top specific marker ids, group cells by = "partition", Only one type in group_cells by. To use plot genes by group, please specify a group with more than one type

文章 细胞焦亡、铁死亡及铜死亡等基因集

...ly, 134 apoptosis-related genes were retrieved from the mRNA expression profile of TCGA-LUAD (Supplementary Table S3).  https://www.frontiersin.org/articles/10.3389/fgene.2022.946939/full 87 apoptosis-related genes were recognized within the KEGG_APOPTOSIS gene set from the Molecular Signatures D...

文章 igraph 包安装错误

...a: could not read symbols: Bad value collect2: ld returned 1 exit status make: *** [igraph.so] Error 1 ERROR: compilation failed for package ‘igraph’ * removing ‘/share/work/biosoft/R/R-v3.4.0/lib64/R/library/igraph’ The downloaded source packages are in         ‘/tmp/Rtmply12u...

文章 gdal 报错dnf安装包错

Last metadata expiration check: 4:19:33 ago on Thu 20 Jun 2024 06:52:12 AM CST. Error:  Problem 1: package gdal-libs-3.4.3-2.el9.x86_64 from epel requires libarmadillo.so.12()(64bit), but none of the providers can be installed   - package gdal-3.4.3-2.el9.x86_64 from epel requires libgdal.so.30...

文章 TCGA 拷贝数变异下载 CNA

...ad(query )cnv.data <- GDCprepare(query )write.table(data.frame(cnv.data,check.names = F), file ="cnv.tsv", sep="\t",row.names =F, quote = F)

问题 docker gene-family image 执行时perl脚本不出现

perl script/mRNAid_to_geneid.pl Arabidopsis_thaliana.TAIR10.41.gff3 mRNA2geneID.txt 在执行这个指令时，出现：Can't open perl script "script/mRNAid_to_geneid.pl": No such file or directory 错误，是perl脚本没有封装在容器中吗？

问题 关于annover建库问题

...and line syntax is changing. ********** ********** For more information, please see: ********** https://github.com/broadinstitute/picard/wiki/Command-Line-Syntax-Transition-For-Users-(Pre-Transition) ********** ********** The command line looks like this in the new syntax: ********** ********...

文章 enrichGSEA_pip.r GSEA富集分析

...pip.r -husage: /work/my_stad_immu/scripts/enrichGSEA_pip.r [-h] -a all.deg.file -g                                                   gmtfile [-p pvalueCutoff]                                                   [-t pvalueCutoff]              ...

问题 老师您好，今天利用docker进行基因家族分析进入组学大讲堂虚拟机时报错，之前一直正常

C:\Program Files\Docker\Docker\resources\bin\docker.exe: error during connect: Post http://%2F%2F.%2Fpipe%2Fdocker_engine/v1.40/containers/create: open //./pipe/docker_engine: The system cannot find the file specified. In the default daemon configuration on Windows, the docker client must be run...

文章 ppi_network.r 蛋白互作网络分析

...list gene.list                        diff expressed gene list file, required  -s ann.db, --species ann.db                        NCBI taxonomy identifiers of the organism (e.g. 9606                        for Human, 10090 for mouse). default 9606  -t score_thre...

文章 nomogram_multi_cox.r 多因素cox分析构建模型并绘制列线图nomogram

...     show this help message and exit  -i data, --data data  input data file path[required]  -t time, --time time  set suvival time column name [required]  -e event, --event event                        set event column name must 0 or 1 code format                      ...

文章 R语言-文件读写

... na.strings = "NA", colClasses = NA, nrows = -1, skip = 0, check.names = TRUE, fill = !blank.lines.skip, strip.white = FALSE, blank.lines.skip = TRUE, comment.char = "#", allowEscapes = FALSE, flush = FALSE, stringsAsFactors = default.strin...

文章 多分组venn图绘制脚本

...# 读取数据文件, 不转换列名venn_dat <- read.delim(input_file, check.names = FALSE)# 从文件中创建一个列表venn_list <- list(venn_dat[, 1], venn_dat[, 2], venn_dat[, 3], venn_dat[, 4], venn_dat[, 5], venn_dat[, 6])# 把列名赋值给列表的key值names(venn_list) <- colna...