...locate(255,0,0);
$blue = $im->colorAllocate(0,0,255);
# make the background transparent and interlaced
$im->transparent($white);
$im->interlaced('true');
# Put a black frame around the picture
$im->rectangle(0,0,99,99,$black);
# Draw a blue oval
$im->arc(...
circos报错：You did not define a karyotype file. Are you sureyour configuration file is well formed?
chr.info文件如图所示，全在Linux环境下用脚本整理的，是我哪里搞错了？还是数目太多？（用的scaffold，MCScanX也是，全部600个scaffold放到配置文件就...
...v2.1.1-----------------------------------------------[2019-04-28 05:49:42] Checking for Bowtie Bowtie version: 2.2.7.0[2019-04-28 05:49:44] Checking for Bowtie index files (genome).. Found both Bowtie1 and Bowtie2 indexes.[2019-04-28 05:49:44] Checking...
... 7
8 Find all occurrences of a motif in a genome. Make a 'POS' file listing these occurrences, and also a BED file re
9
10 SYNTAX: make_bed_around_RE_site.pl <fasta> <motif> <range>
11 fasta: A fasta file representing a genome (reference or...
ERROR net.maizegenetics.plugindef.AbstractPlugin - Problem loading file: /work/my_pop_cucu/00.filter/clean.vcf.gz.
Error: BuilderFromVCF: Ordering incorrect. VCF file must be ordered by position. Please first use SortGenotypeFilePlugin to correctly order the file.
...出现了下面的问题
问题：
--> Q&A for bioinformatics, please
visit the website: https://www.omicsclass.com/
--> R beginners ? I suggest your learning
R language: https://study.omicsclass.com/index
Failed to create bus connection: No such
file or directory
── Attachi...
...ages/aimhii/__init__.py", line 153, in run_fastqjoin subprocess.check_output(cmd, preexec_fn=lambda: signal.signal(signal.SIGPIPE, signal.SIG_DFL)) File "/share/work/biosoft/python/Python-v2.7.11/lib/python2.7/subprocess.py", line 566, in check_output process = Popen(s...
...de 'chr27' on line 30616892 of .vcf file.(This is disallowed for humans. Check if the problem is with your data, or ifyou forgot to define a different chromosome set with e.g. --chr-set.)
使用的命令如下：
plink --vcf $workdir/2022_clean.vcf.gz --pca 10 --out plink_pca \ --a...
...SD_Ligatur_vsKD_Ligatur_ppiL6
> done
--> Q&A for bioinformatics, please visit the website: https://www.omicsclass.com/
--> R beginners ? I suggest your learning R language: https://study.omicsclass.com/index
Failed to create bus connection: No such file or directory
── Attaching c...
...
http://groups.google.com/group/circos-data-visualization
Please include this error, all your configuration, data files and the version
of Circos you're running (circos -v). Do not email me directly -- please use
the group.
Stack trace:
at /share/work/biosoft/circos...
...: ignoring environment value of R_HOME
--> Q&A for bioinformatics, please visit the website: https://www.omicsclass.com/
--> R beginners ? I suggest your learning R language: https://study.omicsclass.com/index
Failed to create bus connection: No such file or directory
Error: packag...