找到约 15 条结果

文章 TCGA数据库中应该下载哪种表达量数据HTSeq-Counts,HTSeq-FPKM,HTSeq-FPKM-UQ

...文件有3种类型,分别对应着不同的定量方法。 FPKM The Fragments per Kilobase of transcript per Million mapped reads (FPKM) calculation normalizes read count by dividing it by the gene length and the total number of reads mapped to protein-coding genes. Upper Quartile FPKM Th...

文章 TCGA数据库中癌症最新缩写中英文对照表获取方法 Project号 与癌种之间对应关系

...CC Adrenocortical carcinoma 肾上腺皮质癌 TCGA-BLCA Bladder Urothelial Carcinoma 膀胱尿路上皮癌 TCGA-LGG Brain Lower Grade Glioma 脑低级脑胶质瘤 TCGA-BRCA Breast invasive carcinoma 乳腺浸润癌 TCGA-CESC Cervical squamous cell carcinoma and endocervical ad...

文章 clinvar数据库人类疾病数据库ANNOVAR数据库使用

...息CLNALLELEID, CLNDN, CLNDISDB, CLNREVSTAT, CLNSIG: ALLELEID ="the ClinVar Allele ID" CLNDN ="ClinVar's preferred disease name for the concept specified by disease identifiers in CLNDISDB"CLNDNINCL ="For included Variant : ClinVar's preferred disease name for the concept specified by dis...

文章 GATK报错:Could not find walker with name: VariantFiltration

... your command are incorrect. ##### ERROR The error message below tells you what is the problem. ##### ERROR ##### ERROR If the problem is an invalid argument, please check the online documentation guide ##### ERROR (or rerun your command with --help) to view allowable command-line arguments for this...

文章 rgb函数选择颜色(并控制深浅)

...tors with values in [0, M] where M is maxColorValue. When this is255, the red, blue, green, and alpha values are coerced to integers in0:255 and the result is computed most efficiently.namescharacter vector. The names for the resulting vector.maxColorValuenumber giving the maximum of the ...

文章 Nature Medicine同期8篇论文,聚焦人工智能在医学领域的应用

...BioWorld列举并介绍了这8篇论文: 1 High-performance medicine: the convergence of human and artificial intelligence 高效医学:人类与智能的融合 作者:Eric J. Topol;单位:Scripps研究所 通过在所有部门中使用标记的大数据以及显著增强的计算...

问题 Bioconductor包安装时出现警告,导致最后出来的图片部分缺失

...or.org/packages/3.2/bioc/src/contrib/AnnotationDbi_1.32.3.tar.gz' Content type 'application/x-gzip' length 4268480 bytes (4.1 MB) ================================================== downloaded 4.1 MB trying URL 'https://bioconductor.org/packages/3.2/bioc/src/contrib/annotate_1.48.0.tar.gz' Con...

文章 plink 软件core dumped报错

...variants loaded from .bim file.9696 missing IDs set.114 people (0 males, 0 females, 114 ambiguous) loaded from .fam.Ambiguous sex IDs written to LDfiltered.nosex .--extract: 435 variants remaining.Using 1 thread (no multithreaded calculations invoked.Before main variant filters, 114 founders and 0 n...

文章 单细胞RNA速率(RNA velocity)分析结果解读

...速率流线图准确地描绘了细胞分化轨迹。 velocity length: the speed or rate of differentiation is given by the length of the velocity vector.velocity confidence:  the coherence of the vector field (i.e., how a velocity vector correlates with its neighboring velocities) provides a mea...

问题 使用FUSION进行TWAS分析权重训练问题

再使用自己的数据进行权重训练的时候,当使用加入blup模型运行GEUV.compute_weights.sh脚本时报错,去除该模型可以正常运行时怎么回事?需要如何解决?

文章 胃癌免疫侵润预后Signature数据挖掘-4.8分SCI思路解析

...Xena 网站下载得到用于预测模型构建;GEO数据库中 GSE62254 and GSE29274数据集用于模型验证。免疫侵润分析方法:ESTIMATE (R包)和 CIBERSORT (在线工具),ssGSEA(GSVA)。 预后signature查找: 免疫评分聚类区分免疫亚型 根据ssGSEA 评估...

问题 转录组kegg富集,deg emsembl id不存在

筛选出的deg的基因emsembl id无法进行转成entrezid,说不存在这些id Error in .testForValidKeys(x, keys, keytype, fks) :    None of the keys entered are valid keys for 'ENSEMBL'. Please use the keys method to see a listing of valid arguments. Calls: bitr Execution halted

文章 Orthology 定义

...or example, when reconstructing a phylogeny from amino acid sequences that the proteins be homologous. [. . . ] there should be two subclasses of homology. Where the homology is the result of gene duplication so that both copies have descended side by side during the history of an organism (for exam...

文章 GATK|Timeout of 30000 milliseconds was reached while trying to acquire a lock on file raw.vcf.tmp.idx.

...是空的。 然后再在命令行中添加-disable_auto_index_creation_and_locking_when_reading_rods 这个参数。并运行命令行

文章 GWAS分析哪个模型最优

...并绘制QQ图。CW trait (H = 80% 下图A) 关联结果看, ANOVA, GLM, and SUPER假阳性高;MLM, CMLM, and ECMLM这几个模型只是尾部少量SNP翘起说明假阳性减少但可能存在假阴性,因为尾部翘起的点较少。而FarmCPU 尾部高高翘起而且多说明这个模型假...