找到约 15 条结果

问题 devtools安装出错 gert包按不上

...rned 1 exit status make: *** [gert.so] Error 1 ERROR: compilation failed for package ‘gert’ Error: package or namespace load failed for ‘gert’ in dyn.load(file, DLLpath = DLLpath, ...):  unable to load shared object '/share/work/biosoft/R/R-v4.0.3/lib64/R/library/00LOCK-gert/00new/g...

文章 BUSCO评估基因组组装和完整性详解

...number of BUSCOs: 255)# Summarized benchmarking in BUSCO notation for file /share/nas5/wangq/project/genome_assembly/liuch/ann/2.assemble/scaffolds.fasta# BUSCO was run in mode: genome# Gene predictor used: metaeuk        ***** Results: *****        C:93.3%[S:9...

文章 pfam数据库介绍及使用

...ection of related protein regionsDomainA structural unitRepeatA short unit which is unstable in isolation but forms a stable structure when multiple copies are presentMotifsA short unit found outside globular domainsCoiled-CoilRegions that predominantly contain coiled-coil motifs, regions that typic...

文章 R语言基础入门—R语言概述与安装！

...量，常用于统计建模。 示例： fac <- factor(c("male", "female", "female", "male"))  # 创建一个因子 好了，今天小编就先给大家介绍到这里，下期我们会详细介绍每种数据结构。希望对您的科研能有所帮助！祝您工作生活顺心快...

文章 eQTL分析之协变量计算

...,header=TRUE)sample_list <- colnames(expr)expr<-expr[,-1]index <- which(sample_list == "id")sample_list <- sample_list[-index]print(sample_list)expr<-t(expr)print(expr)library(peer)#创建modelmodel = PEER()#如果结果是NULL表示数据没有问题PEER_setPhenoMean(model,as.matrix(...

问题 你好，打扰了，想请教一下我是mac版R studio，安装WGCNA总报错，不太看得懂哪里出了问题，麻烦指导一下，急，谢谢！

> install.packages("WGCNA") Package which is only available in source form, and may need compilation of C/C++/Fortran:   ‘WGCNA’ Do you want to attempt to install these from sources? (Yes/no/cancel) Yes installing the source package ‘WGCNA’ 试开URL’https://cran.rstudio.com/src...

文章 ssgsea_enrich_diff.r GSVA富集分析

...es when method="gsva". By default, kcdf="Gaussian" which is suitable when input expression values are continuous, such as microarray fluorescent units in logarithmic scale, RNA-seq log- CPMs, log-RPKMs or...

问题 变异结果质控过滤，去掉低质量变异结果时报错i

...的报错 sing zlib version: 1.2.7 Warning: Expected at least 2 parts in FORMAT entry: ID=PGT,Number=1,Type=String,Description="Physical phasing haplotype information, describing how the alternate alleles are phased in relation to one another; will always be heterozygous and is not intended to des...

问题 prefetch报错

...8.0 sys: mbedtls_ssl_get_verify_result returned 0x8 (  !! The certificate is not correctly signed by the trusted CA  ) 2022-09-27T11:33:05 prefetch.2.8.0 err: path not found while resolving tree within virtual file system module - 'SRR8956151' cannot be found.

问题 差异基因表达分析

...on: No such file or directory Warning message: ###Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. ###Please use `linewidth` instead.   是否是正确的  以及输出文件仅有4个 与课程视频中的预期不同  所得到的文件没有样本名称  请问老师 ...

问题 TCGA数据下载后保存出错

... query, +             directory = DataDirectory) Downloading data for project TCGA-STAD GDCdownload will download 407 files. A total of 105.663384 MB Downloading as: Sun_Aug__5_19_35_20_2018.tar.gz Downloading: 110 MB     >  > # 保存结果，方便后面使用 > data <...

问题 pip install RSeQC安装时候报错，是不是底层的库不全？怎么解决呢

...thon2.7/dist-packages (from bx-python->RseQC) (1.11.0) Building wheels for collected packages: bx-python, python-lzo   Running setup.py bdist_wheel for bx-python ... error   Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-ZbI2FB/bx-p...

问题 使用GATK的GenomicsDBImport合并gvcf导入db时报错Unexpected compressed block length: 1 for /work/GATK/BN14.g.vcf.gz

...e Analysis Toolkit (GATK) v4.4.0.0 10:53:02.160 INFO  GenomicsDBImport - For support and documentation go to https://software.broadinstitute.org/gatk/ 10:53:02.160 INFO  GenomicsDBImport - Executing as root@1fea4655ae23 on Linux v5.14.0-284.11.1.el9_2.x86_64 amd64 10:53:02.160 INFO  GenomicsDB...

问题 老师，转录组差异基因报错，求助，谢谢

...sion/all_gene_fpkm.tsv -r J1 --fdr 0.05 --fc 2 -p J1_vs_J2 --> Q&A for bioinformatics, please visit the website: https://www.omicsclass.com/ --> R beginners ? I suggest your  learning  R language: https://study.omicsclass.com/index Loading required package: ggplot2 Loading required p...

问题 基因组重测序数据分析实战课程中的index.sh运行报错，显示没有对应的pl

各位老师好，我在学习基因组重测序数据分析实战，运行index.sh时，显示没有找到retrieve_seq_from_fasta.pl 这个代码，我去scripts里面找，确实也没有这个retrieve_seq_from_fasta.pl ，怎么办啊?