问题 使用xpclr分析出现TypeError: ufunc 'true_divide' not supported for the input types'

...022-06-24 16:17:52 : INFO : 73,412 SNPs in total are in the provided input files 2022-06-24 16:17:52 : INFO : 0 SNPs excluded as multiallelic 2022-06-24 16:17:52 : INFO : 0 SNPs excluded as missing in all samples in a population 2022-06-24 16:17:52 : INFO : 22,496 SNPs excluded as invariant or si...

问题 用linux系统做gwas时运行脚本报错[Thread-9] ERROR net.maizegenetics.plugindef.AbstractPlugin - 0

...sselPipeline - parseArgs: NOTE: The -glm flags are deprecated. parseArgs: PLEASE RUN THIS COMMAND TO GET USAGE: ./run_pipeline.pl -FixedEffectLMPlugin [Thread-9] INFO net.maizegenetics.pipeline.TasselPipeline - net.maizegenetics.analysis.data.IntersectionAlignmentPlugin: time: Nov 30, 2023 17:14...

问题 xpclr报错AttributeError: 'NoneType' object has no attribute 'keys'

...lling back to scanning to region') Traceback (most recent call last):   File "/hpc/home/t2024096/.conda/envs/xpclr/bin/xpclr", line 196, in <module>     main()   File "/hpc/home/t2024096/.conda/envs/xpclr/bin/xpclr", line 97, in main     g1, g2, positions, genetic_dist = xpclr.util....

文章 seurat_sc_cluster.r 使用帮助：

...t scripts/seurat_sc_cluster.r -husage: scripts/seurat_sc_cluster.r [-h] -i filepath [-d dim]                                   [--resolution resolution [resolution ...]]                                   [--umap.method umap.method]                      ...

文章 测序数据文件中MD5是个啥 ？不要无视我的存在！

...载该软件后，对下载后的文件用专门的软件（如Windows MD5 Check等）做一次MD5校验，以确保我们获得的文件与该站点提供的文件为同一文件，而不是被篡改植入病毒的。 讲到这里，大家应该对MD5有了一个大概的了解。我们回到文...

问题 动植物基因组组装课程，结构注释部分，运行braker.pl出错

...es 系统提示： Failed  to create new species with new_species.pl, check write permissions in /share/work/biosoft/augustus/latest/config//species directory!     Command was perl /share/work/biosoft/augustus/augustus-3.3.3/scripts/new_species.pl --species=Acer_truncatum --AUGUSTUS_CONFIG_P...

文章 微生物多样性分类柱状图按照分组进行排序脚本升级；tax_bar_plot.r

...一行：skip=1df<-read.table(opt$input,sep="\t",skip=1,header = TRUE,check.names=FALSE,comment.char="@")#处理第一列物种分类名字，没有物种名字的全部归为Otherspe.names<-str_split(df$`#OTU ID`,";",simplify=T)spe.name<-str_replace(spe.names[,ncol(spe.names)],"^\\w__","")...

文章 TCGA临床数据下载—TCGAbiolinks

...: indexed clinical: a refined clinical data that is created using the XML files.XML files: original source of the dataBCR Biotab: tsv files parsed from XML files There are two main differences between the indexed clinical and XML files: XML has more information: radiation, drugs information, foll...

文章 蛋白质比对结果快速分类taxid

... int taxid; UT_hash_handle hh; }; struct thread_arg { char input_filename[256]; char output_filename[256]; }; void add_accession(struct my_struct **s, char *accession, int taxid) { struct my_struct *new_item; HASH_FIND_STR(*s, accession, new_item); // Search to see if accessi...

问题 老师，这个警告问题大不大

Wrote 92128018 bytes to primary GFM file: Amphitetranychus_viennensis.genome.1.ht2Wrote 35712720 bytes to secondary GFM file: Amphitetranychus_viennensis.genome.2.ht2Re-opening _in1 and _in2 as input streamsReturning from GFM constructorWarning: a local graph exploded (offset: 1239040, length: 57344...

文章 R 包安装报错：configure: error: gdal-config not found or not executable.

...ackage ‘sf’ ... ** package ‘sf’ successfully unpacked and MD5 sums checked ** using staged installation configure: CC: /share/work/biosoft/gcc/gcc-v6.4.0/bin/gcc configure: CXX: g++ -std=gnu++11 checking for gdal-config... no no configure: error: gdal-config not found or not executable. ERRO...

文章 BiocManager::install("seqinr")时报错

...ge ‘Rcpp’ ... ** package ‘Rcpp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++14 -I"/share/work/biosoft/R/R-v4.2.2/lib64/R/include" -DNDEBUG -I../inst/include/ -I/share/work/biosoft/zlib/include -I/share/work/biosoft/bzip2/bzip2-v1.0.6/include...

文章 人类癌症数据库突变注释

...btype of cancer. For more updated cosmic, see instructions below on how to make them.icgc21: International Cancer Genome Consortium version 21 mutations.nci60: NCI-60 human tumor cell line panel exome sequencing allele frequency data

话题 check.names

问题 KaKs_Calculator2 安装和使用求助, make 后产生错误，请问该怎么解决呢？