找到约 15 条结果

文章 blastall 参数详细说明

...[File Out]stdout -F过滤询问序列[String]TDUST with blastn, SEG with others-G打开gap得分[Integer]-1 -E延伸gap得分[Integer]-1 -XX dropoff value for gapped alignment (in bits)[Integer]0blastn 30, megablast 20, tblastx 0, all others 15-I显示gi号Show GI’s in deflines[T/F]F -q核酸...

问题 使用ensembl下载的人gff3文件进行基因家族分析时,保留编码蛋白基因的命令无法识别人的gff3文件(描述中为日志)

...o Homo_sapiens.protein_coding.gff3 We will discard all features that have the attribute biotype with the value ne protein_coding. ******************************************************************************** *                              - Start parsing -               ...

文章 qiime2自己建立分类器 greengene

...A gene sequences improves when a Naive Bayes classifier is trained on only the region of the target sequences that was sequenced (Werner et al., 2012).  qiime feature-classifier extract-reads \   --i-sequences 99_otus.qza \   --p-f-primer ACTCCTACGGGAGGCAGCAG \   --p-r-primer GGACTACHVGGG...

文章 corr_network.r—ggraph包绘制展示相关性的网络图

...d exit -g GENE_DATA, --gene_data GENE_DATA Enter the file path that contains the gene symbol and gene grouping[required] -p P_DATA, --p_data P_DATA input data file path[required] -r R_DATA, --r_data R_DATA ...

文章 MFP - Molecular Functional Portrait

... microenvironment subtypes predict response to immunotherapy. Cancer Cell. 2021 Jun 14;39(6):845-865.e7. doi: 10.1016/j.ccell.2021.04.014. Epub 2021 May 20. PMID: 34019806.

文章 WRKY基因家族顺势作用原件展示挑选

Figure 4. Cis-acting elements in carrot DcWRKY promoters. The distribution of 12 cis-acting elements in the 2000 bp upstream promoter are shown. The different types of cis-acting elements are represented by different colors, as shown on the right. Wbox, WRKY binding site; CGTCA-motif, cis-acti...

文章 2024最新版《基因家族分析实操》直播培训开始报名了!

...还发表到了二区甚至一区期刊上! 比如一区的Horticulture Research、International Journal of Biological Macromolecules、Industrial Crops and Products 上不乏该类文章。 目前来看,基因家族分析加qPCR+亚细胞定位实验基本就可以发到二区期刊...

文章 文本去重并统计重复次数

...ello World. Apple and Nokia. Hello World. I wanna buy an Apple device. The Iphone of Apple company. Hello World. The Iphone of Apple company. My name is Friendfish. Hello World. Apple and Nokia. 命令如下:$ sort test.txt | uniq -c | sort -rn 4 Hello World. 2 The Iphone of Apple comp...

文章 16S扩增子测序后的PICRUSt预测功能分析原理

...,成本也更低。 2016年发表在微生态学旗舰期刊《TheISME Journal》的《Cigarettesmoking and the oral microbiome in a large study of American adults》[2]中,作者就通过PICRUSt预测了吸烟人群和未吸烟人群的口腔菌群,发现共有83个基因功能代谢通路...

文章 运行python STAMP程序报错

...g-6-9-0-31-setup.exe/download  然后按照以下方法设置:putty Other answers are outdated, or incomplete, or simply don't work.You need to also specify an X-11 server on the host machine to handle the launch of GUId programs. If the client is a Windows machine install Xming. If the client...

文章 TCGA数据分析机构及编码汇总 Center

...念癌症中心 5 jhu-usc.edu CGCC Johns Hopkins / University of Southern California JHU_USC 约翰霍普金斯大学/南加州大学 6 hudsonalpha.org CGCC HudsonAlpha Institute for Biotechnology HAIB 哈德逊阿尔法生物技术研究所 7 unc.edu CGCC University of ...

文章 科研小白:生物实验做不出来是种什么体验?

...CREMτ activity and is required for spermiogenesis 期刊:Nucleic Acids Research IF:10.162 产品名称:p300 Polyclonal Antibody 这两篇10分以上的文献,所使用的的抗体均来自同一家公司——Elabscience! 相关文献还有很多,如果大家感兴趣的话,可...

文章 R脚本报错|URL 'https://raw.githubusercontent.com/YinLiLin/R-CMplot/master/R/CMplot.r': Timeout of 60 seconds was reached

...时。 Error in file(filename, "r", encoding = encoding) :  cannot open the connection to 'https://raw.githubusercontent.com/YinLiLin/R-CMplot/master/R/CMplot.r'Calls: source -> fileIn addition: Warning message:In file(filename, "r", encoding = encoding) :  URL 'https://raw.githubusercontent.c...

文章 熊猫全基因组研究进展

...  Reference: [1].   Li R, Fan W, Tian G, Zhu H, He L, Cai J, et al. The sequence and de novo assembly of the giant panda genome[J]. Nature. 2009;463:311. [2].   Hu Y, Wu Q, Ma S, Ma T, Shan L, Wang X, et al. Comparative genomics reveals convergent evolution between the bamboo-eating giant ...

文章 exp_immu_cor_plot.r 基因表达量与免疫侵润相关性绘图分析

...ernative alternative a character string specifying the alternative hypothesis, must be one of "two.sided" , "greater" or "less". You can specify just the initial letter. [default two.sided] -n ncol, --n...