3D DNA手动切割一下,要么就打碎重新跑一下。ALLHIC有自己的打碎重跑流程。
我组装的这个物种的基因组大小为 400 Mb,一共12条染色体,在 划分GROUP的时候,其中第一条GROUP很长,有 395 Mb,其余都很小。如下:
1. sample.clean.counts_GATC.12g1 394863216
2. sample.clean.counts_GATC.12g10 160144
3. sample.clean.counts_GATC.12g11 117827
4. sample.clean.counts_GATC.12g12 63024
5. sample.clean.counts_GATC.12g2 1098658
6. sample.clean.counts_GATC.12g3 1010580
7. sample.clean.counts_GATC.12g4 530669
8. sample.clean.counts_GATC.12g5 517891
9. sample.clean.counts_GATC.12g6 473041
10. sample.clean.counts_GATC.12g7 359490
11. sample.clean.counts_GATC.12g8 323377
12. sample.clean.counts_GATC.12g9 300824
这是 那个地方 出现问题了呢?