...https://earray.chem.agilent.com/suredesign/help/Target_enrichment_design_files_available_for_download.htm
BED files
You can import these files into a compatible genome browser to graphically view the locations of the tracks in the genome.
[design ID]_Covered.bed - This BED file contains a single...
...: ignoring environment value of R_HOME
--> Q&A for bioinformatics, please visit the website: https://www.omicsclass.com/
--> R beginners ? I suggest your learning R language: https://study.omicsclass.com/index
Registered S3 methods overwritten by 'treeio':
method ...
...generated? (BLUE = best linear unbiased estimate) (Default: false)
-saveToFile <true | false> : Should the results be saved to a file rather than stored in memory? It true, the results will be written to a file as each SNP is analyzed in order to reduce memory requirementsand the results will...
...t alignment file
split splits a file by read group
quickcheck quickly check if SAM/BAM/CRAM file appears intact
fastq converts a BAM to a FASTQ
fasta converts a BAM to a FASTA
-- Statistics
bedcov read depth per BED region
depth...