找到约 15 条结果

文章 将perl模块配置到环境变量中

有时候运行perl脚本会出现类似于“Can’t locate XX.pm in @INC”的报错信息,这条报错的出现存在两种可能性,1.默认@INC路径下没有安装该模块;2.包含该模块的路径没有存储在@INC中,此时需要我们通过cpan下载相关模块(如果已有不...

问题 affy包的函数处理dataframe时,要求dataframe是什么样的呢?

...理一个dataframe,结果提示: > eset <- rma(data) Error in (function (classes, fdef, mtable)  :    unable to find an inherited method for function ‘probeNames’ for signature ‘"data.frame"’ data是一个生成的数据框,有行号和列号,数据都是numeric格...

问题 群体结构分析时,执行代码报错

...137filtered.snp.pruned.nosex  -f 137pop_group.txt -g Group,报错:WARNING: ignoring environment value of R_HOME --> Q&A for bioinformatics, please visit the website: https://www.omicsclass.com/ --> R beginners ? I suggest your  learning  R language: https://study.omicsclass.com/in...

问题 进行阿尔法多样性分析是报错

for i in  goods_coverage  observed_species PD_whole_tree  shannon simpson;do        alpha_compare_stat.r -i alpha_div_index.txt --index $i \             --group Group -f $fastmap -o alpha_diversity_stat         alpha_compare_plot.r -i alpha_div_index.txt -I $i -f $fastmap   \ ...

文章 基于多数据集分析ANLN在宫颈癌所起到的功能

...献: Leilei X , Xiaoling S , Jizi S , et al. ANLN functions as a key candidate gene in cervical cancer as determined by integrated bioinformatic analysis[J]. Cancer Management and Research, 2018, Volume 10:663-670. 相关课程: TCGA-基因差异表达分析、 TCGA-生存分析 ...

问题 tophat2建立索引报错:Error: gtf_to_fasta returned an error.

...] Checking for Bowtie index files (genome)..        Found both Bowtie1 and Bowtie2 indexes.[2019-04-28 05:49:44] Checking for reference FASTA file[2019-04-28 05:49:44] Building transcriptome data files transcriptome_data/known        [FAILED] Error: gtf_to_fasta returned an error.

文章 批量提取excel 中超链接,批量下载网站上的文件

...excel,批量获取链接: 宏代码: Sub test()For Each cell In Range("A1:A32")cell.Offset(0, 1) = cell.Hyperlinks(1).AddressNextEnd Sub 具体操作方法:https://jingyan.baidu.com/article/02027811a089d65acc9ce5ef.html 地址有规律也可以用通配符; curl -f -L -O  -C - ...

问题 win10家庭版安装docker desktop,运行时报错

我在win10家庭版安装了docker desktop,在cmd或powershell中输入命令,出现以下报错,想请教解决办法 error during connect: Get http://%2F%2F.%2Fpipe%2Fdocker_engine/v1.40/version: open //./pipe/docker_engine: The system cannot find the file specified. In the default daemon ...

文章 GEO、TCGA多数据库联合挖掘胰腺导管腺癌预后关键基因

...于yellow模块所有基因获取了一个蛋白质互作网络(80 nodes and 930 edges,见上图B),从中选择出连接点数超过23的所有基因,一共涉及了42个基因,其中和基于模块和性状分析筛选的42个基因的重合有36个,该部分基因将作为候选进一步...

问题 MCSCANX共线性图代码报错

...NX做共线性图时,代码报错,请求老师帮助解决,谢谢(WIN10 64位操作系统) sudo java family_circle_plotter -g /home/manager/share/result/at.gff -s /home/manager/share/result/at.collinearity -c /home/manager/share/result/family.ctl -f /home/manager/share/result/MADS_box_fam...

问题 gatk call SNP样品多采取方法2,报错如下是怎么回事啊

A USER ERROR has occurred: Argument emit-ref-confidence has a bad value: Can only be used in single sample mode currently. Use the --sample-name argument to run on a single sample out of a multi-sample BAM file

问题 devtools安装出错 gert包按不上

/usr/bin/ld: final link failed: Bad value collect2: error: ld returned 1 exit status make: *** [gert.so] Error 1 ERROR: compilation failed for package ‘gert’ Error: package or namespace load failed for ‘gert’ in dyn.load(file, DLLpath = DLLpath, ...):  unable to load shared object ...

文章 GATK|Timeout of 30000 milliseconds was reached while trying to acquire a lock on file raw.vcf.tmp.idx.

...是空的。 然后再在命令行中添加-disable_auto_index_creation_and_locking_when_reading_rods 这个参数。并运行命令行

文章 蛋白质等电点的计算

...数进行计算,代码如下: from Bio.SeqUtils.ProtParam import ProteinAnalysis from Bio import SeqIO # 指定蛋白序列的fasta文件 protein_file = "protein.fasta" # 遍历每一条蛋白序列,计算等电点 for seq_record in SeqIO.parse(protein_file, "fasta"): p = ProteinAnalysis(...

文章 库文件位置问题

      7 The following object is masked from ‘package:VennDiagram’:      8       9     ellipse     10      11 Error in dyn.load(file, DLLpath = DLLpath, ...) :      12   unable to load shared object '/share/work/biosoft/R/R-v4.2.0/lib64/R/library/units/libs/units.so':  ...