找到约 15 条结果

问题 老师您好!我在使用ParaAT是报错,提示Generating homologous group files for alignments: 0,请问这个如何解决?

...下: **************************************************************** Checking input parameters: [OK] Checking Epal2nal.pl: [OK] Checking multiple sequence aligner: muscle[OK] Checking output format: [OK] Checking output folder: [OK] Outputing input parameters: Homologous groups = homo_...

问题 circos绘制基因组共线性图绘图命令运行问题

...       http://groups.google.com/group/circos-data-visualization   Please include this error, all your configuration, data files and the version   of Circos you're running (circos -v).Do not email me directly -- please use   the group.   Stack trace:  at /biosoft/circos/circos-0.69...

问题 误: 无法分配大小为7.4 Mb的矢量 Killed after 9 m

...kBarcodeDefinition(sample.type) :    Primary solid Tumor was not found. Please select a difinition from the table above  >                       sample_type <- "Primary Tumor"  > query.met <- GDCquery(project = tcga_project,  +                       legac...

问题 braker报错

...ess $PYTHON3_PATH from location of python3 executable that is available in your $PATH # Tue Jan 16 17:02:31 2024: Setting $PYTHON3_PATH to /share/work/biosoft/python/Python3/bin # Tue Jan 16 17:02:31 2024: Found environment variable $GENEMARK_PATH. Setting $GENEMARK_PATH to /share/work/biosoft/Gen...

问题 GATK 报错

gatk VariantFiltration : --filter-expression 显示 Input /work/my_reseq/4.snp_indel/var_qc2/BSA_no_filter.vcf   must support random access to enable queries by interval. If it's a file, please index it using the bundled tool IndexFeatureFile该怎么处理呀

问题 circos 分析

...roup.      http://groups.google.com/group/circos-data-visualization  Please include this error, all your configuration, data files and the version  of Circos you're running (circos -v). Do not email me directly -- please use  the group.  Stack trace: at /biosoft/miniconda/envs/reseq/bin/.....

问题 ALLHIC显示找不到sample.bwa_mem.bam

...候都报错,均有显示[E::idx_find_and_load] Could not retrieve index file for '/work/genome/assembly/output/docker/GM/30.ALLHiC2/sample.bwa_mem.bam'。但该地址下是有该文件的。 第二个问题是ALLHIC1时形成了sample.clean.counts_GATC.13g1.txt、sample.clean.counts_GATC.13g2.tx...

文章 利用biopython将cds序列翻译成蛋白序列

...t is used to translate cds to pep')#parser.add_argument('-m','--map',help='Please input ref mapped id file',required=True)parser.add_argument('-f','--fasta',help='Please fasta file',required=True)parser.add_argument('-o','--out_dir',help='Please input complete out_put directory path',default = os.ge...

问题 MENA网站上传数据提示错误

...le or directory at D:\wwwroot\mena\upload_result.cgi line 95. For help, please send mail to this site's webmaster, giving this error message and the time and date of the error. 我用网站提供的示例数据也试了,也换了360浏览器,结果还是一直提示这个错误。请问老...

问题 差异基因表达分析

... ###Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. ###Please use `linewidth` instead.   是否是正确的  以及输出文件仅有4个 与课程视频中的预期不同  所得到的文件没有样本名称  请问老师 这是哪里的问题吶

文章 plink 软件core dumped报错

...orary.bim +LDfiltered-temporary.fam written.9696 variants loaded from .bim file.9696 missing IDs set.114 people (0 males, 0 females, 114 ambiguous) loaded from .fam.Ambiguous sex IDs written to LDfiltered.nosex .--extract: 435 variants remaining.Using 1 thread (no multithreaded calculations invoked....

问题 重测序中SNP分析

...没有jpg文件,报错提示如下:--> Q&A for bioinformatics, please visit the website: https://www.omicsclass.com/ --> R beginners ? I suggest your  learning  R language: https://study.omicsclass.com/index  SNP-Density Plotting. Error in seq.default(0, chorm.maxlen/bp, round(xt...

问题 重测序中SNP分析

...没有jpg文件,报错提示如下:--> Q&A for bioinformatics, please visit the website: https://www.omicsclass.com/ --> R beginners ? I suggest your  learning  R language: https://study.omicsclass.com/index  SNP-Density Plotting. Error in seq.default(0, chorm.maxlen/bp, round(xt...

文章 R inferCNV 安装报错: rjags R 安装报错 automatic detection of JAGS failed. Please use pkg-config to locate the JAGS

1.首先安装依赖的 JAGS tar zxvf JAGS-4.3.0.tar.gz ./configure --prefix=/share/work/biosoft/JAGS/JAGS-v4.3.0 2.设置环境变量: export JAGS_PREFIX=/share/work/biosoft/JAGS/JAGS-v4.3.0 export JAGS_LIBDIR=$JAGS_PREFIX/lib export JAGS_INCLUDEDIR=$JAGS_PREFIX/include export LD_L...

文章 R语言-文件行名重复,对行名重命名

...make.names函数给行命名: d<-read.table("test.xls", header = T, check.names = F) row.names(d)<-make.names(d[,1],TRUE) 查看: 此时只需要把文件多余列删除: d<-d[,-1] 方法二,写循环重命名: d<-read.table("test.xls", header = T, check.names = F) >...