找到约 15 条结果

问题 注释完绘图出现报错信息

...器,没有用docker镜像。出现 Error in library("getopt") : there is no package called ‘getopt’ Execution halted 检查R里已经安装了getopt,调用这个R包也是正常的,但是perl $scriptdir/vcf_stat.pl -vcf snp.unknown_multianno.vcf -type snp就会报错。

文章 简单科普:2019诺贝尔生理学或医学奖为啥颁给“细胞感受氧气”?

...尾: “The most dangerous result in science is the one you were hoping for, because you declare victory and get lazy.” ——科学中最危险的结果就是你所希望的结果,因为你会宣布胜利并变得懒惰。 大佬们永远不会止步于当前的胜利,也不会就此停...

文章 读 10X的空间转录组数据报错

...meric matrix #9240 coordinates <- Seurat::Read10X_Coordinates("tissue_positions_list.csv", filter.matrix = TRUE) is.numeric(coordinates) head(coordinates) tissue_positions_list.csv 这个文件不应该有表头的; 如果有应该去掉

问题 使用vcftools过滤vcf文件缺失位点时报错

#代码 vcftools --gzvcf xxx.vcf.gz --max-missing 1.0 --recode --stdout | gzip -c > xxx.recode.vcf.gz #报错 Error: Require Genotypes in variant file to filter by frequency and/or call rate

问题 asv分类报错

...lugin(s) necessary to load it. Artifact has type 'TaxonomicClassifier' and format 'TaxonomicClassiferTemporaryPickleDirFmt'There was a problem loading '/home/wy/rawdata/am-test/data/database//qiime2/silva-138-99-nb-classifier.qza' as an artifact:  It looks like you have an Artifact but are missing ...

文章 racon 安装报错:

...X executable bin/racon /share/work/biosoft/zlib/lib: file not recognized: Is a directory git clone https://github.com/lbcb-sci/racon && cd racon && mkdir build && cd build cmake -DCMAKE_BUILD_TYPE=Release .. && make cmake -DCMAKE_BUILD_TYPE=Release -DZLIB_LIBRA...

问题 变异结果统计与绘图展示

...le to stat;         -type   <str>   required, file type,snp or indel          -od     <path>  opti onal, directory where output file produced, default cwd         -help           help 这个直接在脚本里更改还是?输出的图片,样本名字是...

文章 微生物多样性分类柱状图按照分组进行排序脚本升级;tax_bar_plot.r

...<- parser$parse_args()#parser$print_help()#set some reasonable defaults for the options that are needed,#but were not specified.if( !file.exists(opt$outdir) ){if( !dir.create(opt$outdir, showWarnings = FALSE, recursive = TRUE) ){stop(paste("dir.create failed: outdir=",opt$outdir,sep=""))}}require...

文章 linux中进程状态

...运行 runnable (on run queue)    S 中断 sleeping  T 停止 traced or stopped  Z 僵死 a defunct ("zombie") process

文章 mysql启动时报错:error while loading shared libraries: libncurses.so.5: cannot open shared object file

...错,报错内容为: [root@localhost bin]# ./mysql -u root./mysql: error while loading shared libraries: libtinfo.so.5: cannot open shared object file: No such file or directory 根据报错内容可以看出,是因为在启动mysql的时候加载了libtinfo.so.5库文件。此时我们可...

问题 GATK 建立压缩的VCF文件索引报错 IndexFeatureFile

/share/work/biosoft/GATK/gatk-4.1.4.1/gatk IndexFeatureFile -I raw.vcf.gz  Error was: htsjdk.tribble.TribbleException.MalformedFeatureFile: Input file is not in valid block compressed format.,

问题 SSR查找及引物设计

...SSR查找及引物设计时出现的问题:unescaped left brace in regex is deprecated here(and will be fatal in Perl 5.30),passed through in regex;marked by <-- HERE in m/([ACGT]{2})\1{ <-- HERE 0.5}/ at ../primer_design/my_misa.pl.txt line 126,<IN> chunk2.是怎么回事?需要怎...

问题 关于mapman使用过程的问题

...s not show any of this bins.Either add those bins manually to this pathway or choose a different Pathway! 数据ID和mapping文件里边的BIN已经是对应的了,但是相关的通路却打不开,这是为什么?

文章 pip报错

...现报错WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv 以“root”用户运行pip可能导致权限中断,可以尝试...

问题 maxquant蛋白组数据搜库报错

...king correctly, Windows wil close the program and notify you if a solution is available,不知为何,希望老师可以赐教,先谢过您。 另外想请教下您。maxquant可以用服务器搜库吗