... <hostname>
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Verify the sge-root directory setting.
In the following example, the value of sge-root is /opt/n1ge6.
Checking $SGE_ROOT directory
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T...
...l role in engaging the immune system in fighting cancer. We collected 124,459
and 105,127 T cells in the tumour and B/H samples respectively. T cell populations (expressing TRAC,
CD3D, CD3E, CD3G) across both data-sets included non-cytotoxic, cytotoxic T cells, naive T cells
(expressing CD40LG) and ...
... Hao, W. Mei, D. Wang, X. Zhang, S. Cheng, L. Zhu, P. Ding, Z. Zhang. (2025) Remodeling of T and endothelial cells during total neoadjuvant therapy in rectal cancer. Cancer Cell. https://doi.org/10.1016/j.ccell.2025.10.008W. Si, S. Cheng, H. He, Y. Zhang, Y. Miao, D. Yi, M. Ni, A. Wang, H. Fan, Y...
... gene expression matrix was then processed and analyzed by Seurat (version 5.3.1) package(Hao et al. 2024).
For each single-cell RNA-seq data, we created a Seurat object with the CreateSeuratObject function. All Seurat objects were merged to one and filtering steps as follows were applied for the...