...vironment value of R_HOME
--> Q&A for bioinformatics, please visit the website: https://www.omicsclass.com/
--> R beginners ? I suggest your learning R language: https://study.omicsclass.com/index
Loading required package: BiocGenerics
Attaching package: ‘BiocGenerics’
The...
...：
All installation instructions are in more detail here.
First, clone the repository and enter the directory:
git clone https://github.com/picrust/picrust2.git
cd
Next, install the required dependencies listed here.
Install PICRUSt2 into it's own environment using conda:
conda env create...
...rence/best_practices
The debugging facility is helpful to figure out what's happening under the
hood
http://www.circos.ca/documentation/tutorials/configuration/debugging
If you're still stumped, get support in the Circos Google Group.
http://groups.google.com/...
...
* removing ‘/share/work/biosoft/R/R-v3.6.1/lib64/R/library/adegenet’
The downloaded source packages are in
‘/tmp/RtmpuYCUHI/downloaded_packages’
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done
Warning messages:
1: In install.packages("adegenet") :
in...
...(description='plot otu tax bar plot')parser$add_argument( "-i", "--input", type="character",required=T,help="input the abuance of tax in each sample,[required]",metavar="filepath")parser$add_argument( "-a", "--xlab", type="character",required=F, default="sample",help="input xlab [default sample]",me...
...
老师好，在运行juicer时报错：
awk: calling undefined function and input record number 1116, file /home/data/t090519/JF/20.Jui/juicer/work/splits/JF2.fastq.gz.sam source line number 298***! Failure during chimera handling of /home/data/t090519/JF/20.Jui/juicer/work/splits/JF2.fastq.gz...
...n of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
请问老师，出现这种情况应该怎么处理？
...t.char = "",check.names=F)
datExpr = datExpr[,-1]
# Take a quick look at what is in the data set
dim(datExpr)
##################check missing value and filter ###################
datExpr = t(datExpr[order(apply(datExpr,1,mad), decreasing = T)[1:5000],])
dim(datExpr)
根据上面的代码，...
...有脚本内存消耗较大，建议确保100G以上的内存空间：
#The gi_taxid_nucl.dmp is about 160 MB and contains two columns: the nucleotide's gi and taxid.
#The gi_taxid_prot.dmp is about 17 MB and contains two columns: the protein's gi and taxid.
#Divisions file (division.dmp):
# ...
...。
Next，:: about Mercator - PlabiPD在注释网站发现一个大坑，The Mapman desktop application requires a diagram that illustrates the pathway or process to be visualized. Each diagram consists of a pathway image file (.svg) and an extra protein/gene mapping file (.xml). Notice, the diagr...