...
* removing ‘/share/work/biosoft/R/R-v3.6.1/lib64/R/library/adegenet’
The downloaded source packages are in
‘/tmp/RtmpuYCUHI/downloaded_packages’
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done
Warning messages:
1: In install.packages("adegenet") :
in...
...
老师好，在运行juicer时报错：
awk: calling undefined function and input record number 1116, file /home/data/t090519/JF/20.Jui/juicer/work/splits/JF2.fastq.gz.sam source line number 298***! Failure during chimera handling of /home/data/t090519/JF/20.Jui/juicer/work/splits/JF2.fastq.gz...
...(description='plot otu tax bar plot')parser$add_argument( "-i", "--input", type="character",required=T,help="input the abuance of tax in each sample,[required]",metavar="filepath")parser$add_argument( "-a", "--xlab", type="character",required=F, default="sample",help="input xlab [default sample]",me...
...n of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
请问老师，出现这种情况应该怎么处理？
...t.char = "",check.names=F)
datExpr = datExpr[,-1]
# Take a quick look at what is in the data set
dim(datExpr)
##################check missing value and filter ###################
datExpr = t(datExpr[order(apply(datExpr,1,mad), decreasing = T)[1:5000],])
dim(datExpr)
根据上面的代码，...
...有脚本内存消耗较大，建议确保100G以上的内存空间：
#The gi_taxid_nucl.dmp is about 160 MB and contains two columns: the nucleotide's gi and taxid.
#The gi_taxid_prot.dmp is about 17 MB and contains two columns: the protein's gi and taxid.
#Divisions file (division.dmp):
# ...
...。
Next，:: about Mercator - PlabiPD在注释网站发现一个大坑，The Mapman desktop application requires a diagram that illustrates the pathway or process to be visualized. Each diagram consists of a pathway image file (.svg) and an extra protein/gene mapping file (.xml). Notice, the diagr...
...set()` and unset GITHUB_PAT in .Renviron (or elsewhere) if you want to use the more secure git credential store instead.
Error: Failed to install 'unknown package' from GitHub:
HTTP error 401.
Bad credentials
Rate limit remaining: 53/60
Rate limit reset at: 2024-11-18 08:36:57 UTC...
... was reached while trying to acquire a lock on file raw.vcf.tmp.idx. Since the GATK uses non-blocking lock acquisition calls that are not supposed to wait, this implies a problem with the file locking support in your operating system.
##### ERROR -----------------------------------------------------...
...
-g GENE_SYMBOL, --gene_symbol GENE_SYMBOL
Enter the file path that contains the gene
symbol[required]
-H HEIGHT, --height HEIGHT
the height of dumbbell plot[optional,default 6]
-W WIDTH, --width WIDTH
...
... BED/GFF/VCF file of ranges to extract from -fi -name Use the name field for the FASTA header -split given BED12 fmt., extract and concatenate the sequencesfrom the BED "blocks" (e.g., exons) -tab Write output in TAB delimited format. ...
...iants loaded from .bim file.2045265 missing IDs set.684 people (0 males, 0 females, 684 ambiguous) loaded from .fam.Ambiguous sex IDs written to plink_pca.nosex .Using up to 23 threads (change this with --threads).Before main variant filters, 684 founders and 0 nonfounders present.Calculating allele...