文章 R语言文件目录操作

...参数dir是要设置的路径。 2、列出目录下文件 函数list.files和dir用法完全一样，可以列出路径下所有文件（包括目录）；函数list.dirs只列出路径下所有目录。 list.files(path =".", pattern = NULL, all.files = FALSE,           full.names =...

文章 Windows Terminal 安装与配置指南

...lse }, "list": [ { // Make changes here to the powershell.exe profile "guid": "{61c54bbd-c2c6-5271-96e7-009a87ff44bf}", "name": "Windows PowerShell", "commandline": "powershell.exe", ...

问题 fastq-dump下载问题？

...astq-dump.2.8.0 err: path not found while searching dynamic library within file system module - failed to open SRA manager ============================================================= An error occurred during processing. A report was generated into the file '/root/ncbi_error_report.xml'. If t...

问题 $python2 -m jcvi.compara.catalog ortholog ath rapa --cscore=0.7这一步报错

... line 40, in blastfilter_main     qbed, sbed, qorder, sorder, is_self = check_beds(blast_file, p, opts)   File "/home/spider/soft/miniconda3/envs/py27/lib/python2.7/site-packages/jcvi/compara/synteny.py", line 490, in check_beds     sbed = Bed(opts.sbed, sorted=sorted)   File "/home/spider...

问题 有参转录组分析

...umn types or set `show_col_types = FALSE` to quiet this message. Error in file(file, "rt") : cannot open the connection Calls: read.table -> file In addition: Warning message: In file(file, "rt") :   cannot open file 'NA/pathway2name.tsv': No such file or directory Execution halted 报错...

文章 qiime1 matplotlab绘图报错解决：_tkinter.TclError: no display name and no $DISPLAY environment variable

...d returned exit status: 1Stdout:StderrTraceback (most recent call last):  File "/share/work/biosoft/python/Python-v2.7.11/bin/plot_taxa_summary.py", line 278, in <module>    main()  File "/share/work/biosoft/python/Python-v2.7.11/bin/plot_taxa_summary.py", line 274, in main    resize_nth...

问题 单倍型分析中最后一步失败，麻烦老师

...: ignoring environment value of R_HOME --> Q&A for bioinformatics, please visit the website: https://www.omicsclass.com/ --> R beginners ? I suggest your  learning  R language: https://study.omicsclass.com/index Error in library(geneHapR) : there is no package called ‘geneHapR’ E...

问题 安装MCScanX make命令找不到 Command 'make' not found,怎吗解决，谢谢！

文章 CNVnator 安装报错

git clone https://github.com/abyzovlab/CNVnator.git cd CNVnator ln -s /path/to/src/samtools samtools make LIBS="-lcrypto" 解决办法： Makefile

问题 meme分析后显示error at: maxw

...以下。 Usage:meme<dataset> [optional arguments]<dataset> file containing sequences in FASTA format[-h]print this message[-o <output dir>]name of directory for output fileswill not replace existing directory[-oc <output dir>]name of directory for output fileswill replace e...

文章 用R语言快速合并大量表格文件

...t = lapply(filenames, function(x){  read.table(file=x,header=T,sep = "\t",check.names = F)})dd=join_all(datalist,by="id", type="full")  #注意指定文件共同的列明by， type 也有left 以第一个文件ID为准，right，inner  取交集，full 取并集write.table(dd,file ="merged.all.ts...

文章 轻松搞定iTOL注释文件

... 0/1 to logical vectors ('keep') [default: none]        -C FILE, --colour-file=FILE                File in YAML format defining alternative colour vectors for domain output [default: ]        -d, --double-to-bars                Cr...

文章 跨物种进化研究必备的‘单拷贝直系同源基因’如何查找

...s config assumes a mysql database named 'orthomcl'.  adjust according# to your situation.dbVendor=mysql                #使用的数据库为mysql，若为oracle，则改成oracledbConnectString=dbi:mysql:orthomcl        #连接到mysql里的orthomcl数据库  dbLogin=wangq        ...

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问题 tgsgapcloser报错

.../latest/build/bin/racon INFO  :   Parsing args end . INFO  :   Checking basic args & env ...               -   Doing error correction by racon with tgs reads.               -   TGS reads type is ont . MINIMAP2_PARAM is  -x ava-ont   MIN_IDY is 0.3 . MIN_MATCH i...