PS C:\Users\Administrator> docker pull omicsclass/gene-family:v1.0.1 What's next: View a summary of image vulnerabilities and recommendations → docker scout quickview omicsclass/gene-family:v1.0.1 Error response from daemon: pull access denied for omicsclass/gene-family, repository d...
上次提到了提供的docker的images中没有找到repeatmasker的数据库RepeatMaskerLib.h5的问题。紧接着我发现流程中的famdb.py脚本也找不到,这个脚本我再课程提供的脚本文件夹中中没找到,同时我在docker的镜像中也没找到。是不是和RepeatMask...
输入的命令是for i in `tail -n+2 $datafile/metadata.txt|cut -f1`;do bowtie2 --threads 6 \ -x $host_index/Canis_lupus/wolf \ -1 $workdir/1.host_del_and_qc/cleandata/${i}_1.fastq \ -2 $workdir/1.host_del_and_qc/cleandata/${i}_2.fastq \ -S $workdir/1.host_del_and_qc/cleandata/${i}.bowtie.sam \ --v...
用课程测试的数据运行admixture的时候,显示segmentation fault. 因为docker镜像omicsclass/reseq里面没有找到admixture,所以用conda install另外安装了admixture。我用docker其他镜像的admixture,也是不行,还是显示segmentation fault。
...ork/biosoft/RepeatMasker/RepeatMasker/Libraries/RepeatMaskerLib.h5;但我docker获得的镜像genome-assembly:v1.0中/share/work/biosoft/却没有RepeatMasker这个文件夹。请问是否是重复序列数据库未放在docker的镜像中?
...kdir mysql cd mysql mkdir log data conf #下载mysql 官方镜像 #docker pull mysql:5.7 #启动镜像 docker run -p 3399:3306 --name mysql_pasa \ -v $PWD/log:/var/log/mysql \ -v $PWD/data:/var/lib/mysql \ -v $PWD/conf:/etc/mysql \ -e MYSQL_ROOT_PASSWORD=123456 \ -d mysql:5.7 老师...
[chenzhaojin@lfpara ~]$ curl -s https://hub.docker.com/v2/repositories/omicsclass/genome-annotation/ [chenzhaojin@lfpara ~]$ docker search omicsclass NAME DESCRIPTION STARS...